SRR3550329_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550329_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	888800
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5006	0.5632313231323133	No Hit
CGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG	1236	0.13906390639063906	No Hit
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1128	0.1269126912691269	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	941	0.10587308730873088	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTT	934	0.10508550855085508	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTA	20	7.0324226E-4	45.0	41
GCGATCG	25	3.8900896E-5	45.0	9
TATCGAG	20	7.0324226E-4	45.0	1
CCGTTAG	25	3.8900896E-5	45.0	1
CGAATAT	130	0.0	41.538464	14
CGTTTTT	2795	0.0	41.37746	1
AACGGGA	265	0.0	40.75472	4
TTAAGCG	45	1.9274012E-8	40.0	1
GTACTAG	45	1.9274012E-8	40.0	1
TAGGACG	45	1.9274012E-8	40.0	1
TCGTTTA	40	3.457044E-7	39.375	38
AAGGGCG	310	0.0	38.46774	5
GCTACGA	135	0.0	38.333336	10
GCAAACG	90	0.0	37.5	1
GTCGATG	30	1.1397137E-4	37.499996	1
CGTATAT	30	1.1397137E-4	37.499996	14
ACGTTAG	30	1.1397137E-4	37.499996	1
ATAGACG	30	1.1397137E-4	37.499996	1
AATTGCG	30	1.1397137E-4	37.499996	1
TCCGTAT	30	1.1397137E-4	37.499996	12