SRR3550328_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550328_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	875475
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16036	1.8316913675433335	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT	2986	0.341071989491419	No Hit
CGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG	2161	0.24683743110882664	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC	1921	0.21942374139752707	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCT	1767	0.20183329049944318	No Hit
CGTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT	1333	0.15226020160484308	TruSeq Adapter, Index 15 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	1007	0.11502327308032784	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACCGG	40	6.8121153E-9	45.000004	2
CGGTCTA	45	3.8380676E-10	45.0	31
GCTAACG	25	3.890042E-5	45.0	1
CGTTTTT	9480	0.0	43.81329	1
CGTAAGG	110	0.0	42.954544	2
TCGACAC	60	3.6379788E-12	41.249996	34
TGATTCG	45	1.9274012E-8	40.0	15
GCGTAAG	70	0.0	38.571426	1
TGCGGGT	135	0.0	38.333332	4
CTAACGG	65	9.094947E-12	38.076927	2
GCGATAC	65	9.094947E-12	38.076927	9
TAACGGG	190	0.0	37.894737	3
GTTTTTT	11090	0.0	37.736702	2
CTACGAA	90	0.0	37.5	11
AACACGT	360	0.0	37.5	41
TATAGCG	30	1.13969974E-4	37.499996	1
GCGTACG	30	1.13969974E-4	37.499996	1
GCCGATT	55	2.748493E-9	36.81818	9
CGTTTCT	460	0.0	36.68478	1
AACCGGA	25	0.0021068351	36.0	29