SRR3550326_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550326_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	621151
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1252	0.2015612950796183	TruSeq Adapter, Index 15 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1197	0.1927067653436926	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1144	0.18417421850725507	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	836	0.134588851986071	TruSeq Adapter, Index 21 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAAGG	60	0.0	45.000004	2
ACCGGTA	20	7.0307805E-4	45.0	10
TCCGAAC	25	3.888728E-5	45.0	43
CGCATGG	70	0.0	45.0	2
CGTACGA	20	7.0307805E-4	45.0	29
TTACGTA	20	7.0307805E-4	45.0	16
ACCGTCC	50	2.1827873E-11	45.0	27
ACGACTA	20	7.0307805E-4	45.0	39
CGAGACA	150	0.0	40.500004	22
AACACGT	140	0.0	40.17857	41
GTACACG	45	1.925764E-8	40.0	1
GCACGAG	45	1.925764E-8	40.0	1
GTTAGCG	40	3.4548066E-7	39.375	1
GCGTACG	40	3.4548066E-7	39.375	1
GTATGCG	35	6.243654E-6	38.571426	1
AATAGCG	35	6.243654E-6	38.571426	1
CGGGATC	100	0.0	38.25	6
TTGCGAG	95	0.0	37.894733	1
ACACGAC	155	0.0	37.741936	26
GATCGAC	30	1.1393179E-4	37.500004	45