SRR3550318_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550318_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	950405
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13629	1.4340202334794114	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	4133	0.43486724080786615	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG	3389	0.35658482436434996	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC	2893	0.3043965467353391	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	2460	0.2588370221116261	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	1720	0.18097547887479548	No Hit
CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	1323	0.13920381311125257	No Hit
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	1119	0.11773927957028846	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTC	1039	0.10932181543657704	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	20	7.032669E-4	45.000004	21
TATAGCG	40	6.8121153E-9	45.000004	1
TTACGAG	40	6.8121153E-9	45.000004	1
CGTTTTT	7555	0.0	43.09398	1
CGGTCTA	45	1.927765E-8	40.000004	31
CGTTTCT	595	0.0	38.94958	1
CGCCCTA	35	6.247148E-6	38.571426	25
ACACGAC	575	0.0	38.347828	26
ACGACCA	570	0.0	37.894733	28
CGTAAGG	125	0.0	37.8	2
CTATCGG	30	1.1397731E-4	37.500004	2
GCTATCG	30	1.1397731E-4	37.500004	1
TACGACG	30	1.1397731E-4	37.500004	1
GCGATTA	90	0.0	37.500004	9
AGACACG	590	0.0	37.372883	24
ATAGGGA	560	0.0	37.36607	4
CACGTGA	525	0.0	37.285717	43
ACAACGA	350	0.0	37.285713	13
CGTTCTG	370	0.0	37.094593	1
GTTTTTT	8965	0.0	37.069157	2