SRR3550314_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550314_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	307933
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	1406	0.45659283025853026	No Hit
GCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	1250	0.40593245933368616	No Hit
CTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGCT	754	0.24485845947007953	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	434	0.14093974988065586	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCC	403	0.13087262488918044	No Hit
CGCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTG	358	0.11625905635316773	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	355	0.11528481845076688	No Hit
ACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	313	0.10164548781715502	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	35	1.2080636E-7	45.000004	4
CACCGTG	30	2.1603064E-6	45.000004	16
GTCGATG	20	7.0252345E-4	45.0	1
TTGTGCG	20	7.0252345E-4	45.0	1
CAAGTCG	20	7.0252345E-4	45.0	43
CTATAGG	20	7.0252345E-4	45.0	1
TTCACGG	25	3.8841317E-5	45.0	2
GGATCGC	20	7.0252345E-4	45.0	8
TCCTCGA	20	7.0252345E-4	45.0	15
CGACAAT	25	3.8841317E-5	45.0	20
GTAATAG	20	7.0252345E-4	45.0	1
CCCGTCG	20	7.0252345E-4	45.0	40
TACGCGG	25	3.8841317E-5	45.0	2
TACGATG	20	7.0252345E-4	45.0	1
CTACGAA	25	3.8841317E-5	45.0	11
ACAGCGT	25	3.8841317E-5	45.0	2
GATATCA	20	7.0252345E-4	45.0	32
GTCAAGC	50	2.1827873E-11	45.0	16
CGGGATA	20	7.0252345E-4	45.0	6
AGCGATT	20	7.0252345E-4	45.0	22