##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550314_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 307933 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.25924145836919 33.0 31.0 34.0 30.0 34.0 2 32.35941259949404 34.0 31.0 34.0 30.0 34.0 3 32.3377130739479 34.0 31.0 34.0 30.0 34.0 4 35.90701548713519 37.0 35.0 37.0 35.0 37.0 5 35.95753621729402 37.0 35.0 37.0 35.0 37.0 6 35.96564837156134 37.0 35.0 37.0 35.0 37.0 7 36.17642798920544 37.0 36.0 37.0 35.0 37.0 8 36.094793347903604 37.0 36.0 37.0 35.0 37.0 9 37.90441751939545 39.0 38.0 39.0 35.0 39.0 10 37.60718078283263 39.0 37.0 39.0 35.0 39.0 11 37.46555906642029 39.0 37.0 39.0 35.0 39.0 12 37.24423819467222 39.0 37.0 39.0 35.0 39.0 13 37.144326850321335 39.0 37.0 39.0 33.0 39.0 14 38.32868188859265 40.0 37.0 41.0 34.0 41.0 15 38.49136338099522 40.0 38.0 41.0 35.0 41.0 16 38.47265151834977 40.0 37.0 41.0 35.0 41.0 17 38.457495624048086 40.0 37.0 41.0 34.0 41.0 18 38.430538461288656 40.0 37.0 41.0 34.0 41.0 19 38.35583389893256 40.0 37.0 41.0 34.0 41.0 20 38.33591073382846 40.0 37.0 41.0 34.0 41.0 21 38.11901290215729 40.0 36.0 41.0 34.0 41.0 22 38.1726901631199 40.0 36.0 41.0 34.0 41.0 23 38.1780354817444 40.0 36.0 41.0 34.0 41.0 24 38.17381053670766 40.0 36.0 41.0 34.0 41.0 25 37.90644393423245 40.0 36.0 41.0 34.0 41.0 26 37.900718662826 40.0 36.0 41.0 34.0 41.0 27 37.90780137237646 40.0 36.0 41.0 34.0 41.0 28 37.91038310281782 40.0 36.0 41.0 34.0 41.0 29 37.932917225500354 40.0 36.0 41.0 34.0 41.0 30 37.72815839809309 40.0 36.0 41.0 34.0 41.0 31 37.75420627214361 40.0 36.0 41.0 34.0 41.0 32 37.7047604511371 40.0 35.0 41.0 34.0 41.0 33 37.59291144502213 40.0 35.0 41.0 33.0 41.0 34 37.55422121045812 40.0 35.0 41.0 33.0 41.0 35 37.50184942828472 40.0 35.0 41.0 33.0 41.0 36 37.38301838386922 40.0 35.0 41.0 33.0 41.0 37 37.2992274293434 40.0 35.0 41.0 33.0 41.0 38 37.276589387951276 40.0 35.0 41.0 33.0 41.0 39 37.221918404328214 40.0 35.0 41.0 33.0 41.0 40 37.12672561888463 39.0 35.0 41.0 33.0 41.0 41 37.04495133681677 39.0 35.0 41.0 32.0 41.0 42 37.05185543608512 39.0 35.0 41.0 33.0 41.0 43 36.977836087720384 39.0 35.0 41.0 32.0 41.0 44 36.80998463951574 39.0 35.0 41.0 32.0 41.0 45 36.70975504411674 39.0 35.0 41.0 32.0 41.0 46 36.63050079075643 39.0 35.0 41.0 31.0 41.0 47 36.575199799956486 39.0 35.0 41.0 31.0 41.0 48 36.55062627259826 39.0 35.0 41.0 31.0 41.0 49 36.35345026353135 38.0 35.0 41.0 31.0 41.0 50 36.30634586095027 38.0 35.0 41.0 31.0 41.0 51 35.33763838237539 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 5.0 10 9.0 11 7.0 12 3.0 13 5.0 14 6.0 15 9.0 16 17.0 17 20.0 18 56.0 19 111.0 20 202.0 21 319.0 22 474.0 23 764.0 24 1115.0 25 1512.0 26 1891.0 27 2224.0 28 2534.0 29 3073.0 30 3738.0 31 4736.0 32 6331.0 33 9453.0 34 19871.0 35 29414.0 36 20147.0 37 30601.0 38 57572.0 39 111634.0 40 78.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.88302974997808 20.813293800924228 24.454020842196194 11.849655606901502 2 32.41776620238818 24.37932926967879 25.37597464383486 17.826929884098163 3 31.688386759457416 24.457593047838326 26.65677273952451 17.197247453179752 4 28.913757213419807 25.78710303864802 25.999162155403937 19.299977592528244 5 25.17885384158242 30.525796195925736 24.566382946939758 19.728967015552083 6 27.07666927545927 33.448509903128276 23.779198721799872 15.695622099612578 7 80.09079897250376 6.385479958302617 8.387538847736359 5.136182221457266 8 80.2681102707407 5.504444148564786 8.589206093533333 5.638239487161168 9 74.13041148561538 7.763052352297415 10.78124137393524 7.325294788151967 10 42.691104883205114 24.810267168507437 18.04256120649622 14.456066741791235 11 32.2427281259235 25.097342603748217 23.55317552844288 19.10675374188541 12 29.213822487359266 22.887121549168164 28.164893012441016 19.734162951031557 13 24.133496572306314 26.179720913315556 29.69639499501515 19.99038751936298 14 20.093007245082532 29.990290095572735 28.639022124942766 21.277680534401963 15 19.649079507555214 24.881711281350164 36.128963118600474 19.340246092494144 16 21.48129625600374 24.743694245176712 32.9766540123988 20.798355486420746 17 21.45564132457385 23.973396810345108 27.968746448090982 26.60221541699006 18 22.63966512195835 24.98108354739505 30.02438842215677 22.354862908489835 19 24.123754193282306 26.6499530742077 26.729840582204574 22.496452150305423 20 26.717824981408295 26.428151578427777 26.611957796014067 20.242065644149864 21 24.101671467494555 27.078617751264073 28.041814290771043 20.77789649047033 22 21.687185199377787 25.812757970077904 26.483358392897156 26.01669843764715 23 21.760902533992784 26.45770346146727 27.680372028980333 24.10102197555962 24 23.35475574232057 24.675172846041185 28.636424157203027 23.33364725443522 25 22.534772174466525 26.10600357870056 26.560972679121758 24.79825156771116 26 22.265557767436423 28.063897016558798 27.330945367985894 22.33959984801889 27 22.768914017010193 27.777471073252947 27.732656129742512 21.720958779994348 28 19.721173112332878 27.67712456930566 30.196503784914253 22.40519853344721 29 22.818924896000105 24.994398132061196 28.30226055667954 23.884416415259164 30 22.636092916316212 26.98411667473119 27.36341996473259 23.01637044422001 31 24.765452224996995 26.859738969191348 25.501001841309634 22.87380696450202 32 26.44568786067099 25.62310632507721 25.727025034666635 22.20418077958517 33 23.15568646426333 27.917111839263736 25.02979544251509 23.897406253957843 34 21.344578203700156 25.17787960368002 28.64194483864997 24.835597353969856 35 22.97772567409144 26.35930543332478 26.233628743915073 24.429340148668704 36 23.803229923392426 28.271734435737645 25.705916546781282 22.21911909408865 37 22.276923876297765 27.909967427979467 28.609470241903274 21.2036384538195 38 21.849233437143795 26.887342376426044 26.404769868770156 24.85865431766001 39 22.6244020614874 25.44189807523065 27.404337956633423 24.529361906648525 40 24.702126761340942 23.34501336329656 27.52904040814073 24.423819467221765 41 21.419919268152487 27.008147876323747 24.928799446632873 26.643133408890897 42 23.97534528614991 25.90303734903372 26.636313743574092 23.485303621242284 43 24.180259991621554 25.008037462694805 27.736877827319578 23.07482471836406 44 21.788505941227477 25.53120321628406 28.133067907629254 24.547222934859207 45 22.14345328366885 24.60015652755632 26.755495513634457 26.500894675140373 46 23.265125855299694 25.33668038177136 27.072122831914736 24.326070931014215 47 21.19519505866536 25.70721553065115 29.14919803983334 23.948391370850153 48 22.39026021894373 23.87077708462555 28.087603472183886 25.651359224246832 49 22.26166081582682 23.635661004179482 29.928588361754016 24.174089818239683 50 21.628081433298803 23.667161363023776 28.968964027889182 25.735793175788242 51 20.67754998652304 24.30009125361686 26.05209574810105 28.97026301175905 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 101.0 1 191.0 2 281.0 3 551.0 4 821.0 5 645.5 6 470.0 7 483.0 8 496.0 9 540.0 10 584.0 11 581.0 12 578.0 13 597.0 14 616.0 15 606.5 16 597.0 17 631.0 18 665.0 19 636.5 20 608.0 21 653.5 22 699.0 23 781.0 24 863.0 25 1209.5 26 1957.5 27 2359.0 28 2704.0 29 3049.0 30 3799.5 31 4550.0 32 5227.5 33 5905.0 34 6301.0 35 6697.0 36 7127.5 37 7558.0 38 8688.5 39 9819.0 40 11645.5 41 13472.0 42 15772.5 43 18073.0 44 20162.5 45 22252.0 46 24713.0 47 27174.0 48 30239.5 49 33305.0 50 32984.0 51 32663.0 52 28156.5 53 23650.0 54 20087.0 55 16524.0 56 15487.5 57 14451.0 58 13301.5 59 12152.0 60 12207.5 61 12263.0 62 11307.0 63 10351.0 64 8874.5 65 7398.0 66 6127.0 67 4856.0 68 4118.5 69 3381.0 70 2955.0 71 2529.0 72 2114.0 73 1699.0 74 1392.0 75 911.5 76 738.0 77 652.0 78 566.0 79 442.5 80 319.0 81 200.5 82 82.0 83 53.5 84 25.0 85 37.0 86 49.0 87 25.5 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 307933.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.50182822783781 #Duplication Level Percentage of deduplicated Percentage of total 1 73.714 23.958397659868368 2 10.026 6.517266596246039 3 3.595 3.5053221743723086 4 1.727 2.2452262939790364 5 1.084 1.7615990899488096 6 0.7570000000000007 1.4762330381083948 7 0.637 1.4492565206792882 8 0.541 1.4066791257008207 9 0.459 1.3426505240919802 >10 7.313 50.906963516697814 >50 0.108 2.2598521166815635 >100 0.036000000000000004 2.0622410010563095 >500 0.001 0.24506378483789712 >1k 0.002 0.8632485577313723 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC 1406 0.45659283025853026 No Hit GCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC 1250 0.40593245933368616 No Hit CTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGCT 754 0.24485845947007953 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC 434 0.14093974988065586 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCC 403 0.13087262488918044 No Hit CGCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTG 358 0.11625905635316773 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 355 0.11528481845076688 No Hit ACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC 313 0.10164548781715502 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.24745967466949E-4 0.0 0.0 0.2565493142988897 0.0 2 3.24745967466949E-4 0.0 0.0 1.4139439423510958 0.0 3 3.24745967466949E-4 0.0 0.0 1.9302900306235447 0.0 4 3.24745967466949E-4 0.0 0.0 2.483007667252292 0.0 5 3.24745967466949E-4 0.0 0.0 4.152526685999876 0.0 6 3.24745967466949E-4 0.0 0.0 5.100135419068434 0.0 7 3.24745967466949E-4 0.0 0.0 6.114317075467715 0.0 8 3.24745967466949E-4 0.0 0.0 7.747139799891535 0.0 9 3.24745967466949E-4 0.0 0.0 8.408322589654244 0.0 10 3.24745967466949E-4 0.0 0.0 9.778425826397301 0.0 11 3.24745967466949E-4 0.0 0.0 11.525883877336954 0.0 12 3.24745967466949E-4 0.0 0.0 12.781027041596712 0.0 13 3.24745967466949E-4 0.0 0.0 13.299646351641428 0.0 14 3.24745967466949E-4 0.0 0.0 13.482153585357853 0.0 15 3.24745967466949E-4 0.0 0.0 13.854312464074978 0.0 16 3.24745967466949E-4 0.0 0.0 14.644419402922065 0.0 17 3.24745967466949E-4 0.0 0.0 15.612162385973573 0.0 18 3.24745967466949E-4 0.0 0.0 16.797809913195405 0.0 19 3.24745967466949E-4 0.0 0.0 17.379754686896174 0.0 20 3.24745967466949E-4 0.0 0.0 17.97079234768602 0.0 21 3.24745967466949E-4 0.0 0.0 18.618985298750054 0.0 22 3.24745967466949E-4 0.0 0.0 19.28146707238263 0.0 23 3.24745967466949E-4 0.0 0.0 19.96668106373789 0.0 24 3.24745967466949E-4 0.0 0.0 20.533687522935185 0.0 25 6.49491934933898E-4 0.0 0.0 20.988331877388912 0.0 26 6.49491934933898E-4 0.0 0.0 21.444599961679977 0.0 27 6.49491934933898E-4 0.0 0.0 21.886254477435028 0.0 28 6.49491934933898E-4 0.0 0.0 22.32758424722261 0.0 29 6.49491934933898E-4 0.0 0.0 22.76729028717286 0.0 30 6.49491934933898E-4 0.0 0.0 23.342740141524292 0.0 31 0.002273221772268643 0.0 0.0 23.83050858465965 0.0 32 0.002273221772268643 0.0 0.0 24.273462084284567 0.0 33 0.002273221772268643 0.0 0.0 24.72973016857563 0.0 34 0.002273221772268643 0.0 0.0 25.1908694423787 0.0 35 0.002273221772268643 0.0 0.0 25.672467712132185 0.0 36 0.002273221772268643 0.0 0.0 26.12516359078111 0.0 37 0.002273221772268643 0.0 0.0 26.579158453299907 0.0 38 0.002273221772268643 0.0 0.0 27.02795738033923 0.0 39 0.002273221772268643 0.0 0.0 27.50825666622285 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGT 35 1.2080636E-7 45.000004 4 CACCGTG 30 2.1603064E-6 45.000004 16 GTCGATG 20 7.0252345E-4 45.0 1 TTGTGCG 20 7.0252345E-4 45.0 1 CAAGTCG 20 7.0252345E-4 45.0 43 CTATAGG 20 7.0252345E-4 45.0 1 TTCACGG 25 3.8841317E-5 45.0 2 GGATCGC 20 7.0252345E-4 45.0 8 TCCTCGA 20 7.0252345E-4 45.0 15 CGACAAT 25 3.8841317E-5 45.0 20 GTAATAG 20 7.0252345E-4 45.0 1 CCCGTCG 20 7.0252345E-4 45.0 40 TACGCGG 25 3.8841317E-5 45.0 2 TACGATG 20 7.0252345E-4 45.0 1 CTACGAA 25 3.8841317E-5 45.0 11 ACAGCGT 25 3.8841317E-5 45.0 2 GATATCA 20 7.0252345E-4 45.0 32 GTCAAGC 50 2.1827873E-11 45.0 16 CGGGATA 20 7.0252345E-4 45.0 6 AGCGATT 20 7.0252345E-4 45.0 22 >>END_MODULE