SRR3550313_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550313_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	233065
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	802	0.3441100122283483	No Hit
CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	772	0.3312380666337717	No Hit
CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT	533	0.2286915667303113	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	316	0.13558449359620706	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	278	0.11928002917641002	No Hit
CGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	275	0.11799283461695236	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCC	243	0.10426275931607062	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	20	7.021702E-4	45.000004	6
GGGACGT	20	7.021702E-4	45.000004	7
TACGAAT	30	2.1580308E-6	45.000004	12
CGGGCTA	20	7.021702E-4	45.000004	6
CGAATAT	30	2.1580308E-6	45.000004	14
GACGGGT	35	1.2063538E-7	45.000004	4
CATACGA	20	7.021702E-4	45.000004	18
CACGTGA	30	2.1580308E-6	45.000004	43
AATACGG	20	7.021702E-4	45.000004	2
AGGGCGT	25	3.8812075E-5	45.0	6
ACGGGAC	80	0.0	42.187504	5
AACGGGA	50	1.0732037E-9	40.5	4
CGTTTTT	390	0.0	40.384617	1
GACGGGA	95	0.0	40.263157	4
AGCGGGC	90	0.0	40.0	4
AATGGGC	85	0.0	39.705883	4
TTAGCGG	40	3.4424193E-7	39.375004	2
TACGGGA	80	0.0	39.375004	4
TATTAGG	40	3.4424193E-7	39.375004	2
CGGGTAT	35	6.2268737E-6	38.57143	6