SRR3550308_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550308_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	504219
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	1669	0.3310069632441459	No Hit
CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	1629	0.3230739024114522	No Hit
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	1567	0.3107776581207769	Illumina Single End Adapter 2 (95% over 21bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	661	0.1310938302602639	No Hit
TCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	588	0.11661599424059783	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCC	562	0.11145950469934691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	20	7.029516E-4	45.0	6
CGGCGCA	55	1.8189894E-12	45.0	22
CGCGGTA	20	7.029516E-4	45.0	30
CGCATGT	20	7.029516E-4	45.0	35
CGCGCAA	20	7.029516E-4	45.0	18
CGATTCC	25	3.887681E-5	45.0	37
TAACGCG	20	7.029516E-4	45.0	26
ACGGGTA	50	2.1827873E-11	45.0	5
TCTACGG	20	7.029516E-4	45.0	2
AACGCGA	20	7.029516E-4	45.0	27
TTGCGTC	45	3.8380676E-10	45.0	16
CGTACTG	25	3.887681E-5	45.0	11
TCGTATA	20	7.029516E-4	45.0	1
TTTGCGC	20	7.029516E-4	45.0	13
CGGTCTA	25	3.887681E-5	45.0	31
GCTCGAT	25	3.887681E-5	45.0	34
TCGCGTG	25	3.887681E-5	45.0	1
TCGGTAA	20	7.029516E-4	45.0	28
TGCGTCG	20	7.029516E-4	45.0	1
TGCGTAG	20	7.029516E-4	45.0	1