SRR3550307_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550307_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	788243
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	2456	0.3115790435183059	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	1978	0.2509378453091242	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGC	1335	0.16936401591894887	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCG	1256	0.15934172583835188	No Hit
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	1238	0.15705816607315257	Illumina Single End Adapter 2 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTC	907	0.11506603927976525	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTTTCG	20	7.0319354E-4	45.000004	1
ACGCACT	30	2.1646301E-6	45.000004	40
GCGAACT	20	7.0319354E-4	45.000004	13
ATTACGT	20	7.0319354E-4	45.000004	34
CCCCGAC	20	7.0319354E-4	45.000004	1
GTTAACG	40	6.8102963E-9	45.000004	1
CTACGTA	20	7.0319354E-4	45.000004	35
CGAATCC	20	7.0319354E-4	45.000004	13
CGAATAC	20	7.0319354E-4	45.000004	29
GTATACG	20	7.0319354E-4	45.000004	1
CACGTAC	20	7.0319354E-4	45.000004	20
CGTTTAG	20	7.0319354E-4	45.000004	30
TATCGCG	20	7.0319354E-4	45.000004	32
TCGAATC	20	7.0319354E-4	45.000004	12
ATCGCGA	20	7.0319354E-4	45.000004	22
TACGTCC	20	7.0319354E-4	45.000004	36
TCTTACG	35	1.2112832E-7	45.0	1
TATTCGC	25	3.8896862E-5	45.0	16
CTATTCG	25	3.8896862E-5	45.0	15
TATAGCG	45	3.8380676E-10	45.0	1