SRR3550302_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550302_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	193234
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6182	3.199229949180786	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	516	0.26703375182421313	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	385	0.19924029932620554	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT	363	0.18785513936470807	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCC	303	0.15680470310607864	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	267	0.13817444135090098	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	230	0.11902667232474616	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGTAAT	35	1.2049168E-7	45.000004	7
ACGGGAA	35	1.2049168E-7	45.000004	5
CGTAAGG	35	1.2049168E-7	45.000004	2
TCGTTGA	20	7.018709E-4	45.0	24
GATACCG	20	7.018709E-4	45.0	27
GATCGTT	25	3.8787257E-5	45.0	9
CTCGTAG	20	7.018709E-4	45.0	15
CCCTAGC	20	7.018709E-4	45.0	21
GGCGTGA	25	3.8787257E-5	45.0	35
CGTTGAT	20	7.018709E-4	45.0	25
TGAACGG	20	7.018709E-4	45.0	2
TACGGGA	40	6.7648216E-9	45.0	4
CGACAGG	20	7.018709E-4	45.0	2
CCTAACA	20	7.018709E-4	45.0	27
TCGATCA	20	7.018709E-4	45.0	17
ATCGTTG	20	7.018709E-4	45.0	23
AAACGCT	20	7.018709E-4	45.0	10
AGCGGGT	25	3.8787257E-5	45.0	4
CGCTCGT	20	7.018709E-4	45.0	13
AGGCCCA	20	7.018709E-4	45.0	1