##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550302_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 193234 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.69576782553795 28.0 16.0 31.0 16.0 33.0 2 27.117500025875362 30.0 25.0 33.0 16.0 33.0 3 27.27816015815022 31.0 25.0 33.0 16.0 34.0 4 29.04240972085658 32.0 19.0 35.0 19.0 37.0 5 32.056278915718764 33.0 32.0 35.0 28.0 37.0 6 31.986653487481497 35.0 32.0 35.0 23.0 37.0 7 32.14174006644793 35.0 32.0 35.0 27.0 37.0 8 33.4918440854094 35.0 33.0 37.0 30.0 37.0 9 36.04947369510542 37.0 35.0 39.0 31.0 39.0 10 35.30626080296428 37.0 34.0 39.0 30.0 39.0 11 34.876652141962595 37.0 34.0 39.0 27.0 39.0 12 34.58362917498991 37.0 33.0 39.0 26.0 39.0 13 34.99903226140327 37.0 34.0 39.0 27.0 39.0 14 35.8453015514868 38.0 34.0 40.0 27.0 41.0 15 36.39390583437697 38.0 34.0 40.0 30.0 41.0 16 36.14836933458915 38.0 34.0 40.0 29.0 41.0 17 35.85302793504249 38.0 34.0 40.0 29.0 41.0 18 35.3547822846911 38.0 34.0 39.0 27.0 40.0 19 34.58582858089156 37.0 32.0 39.0 26.0 40.0 20 35.25588147013465 35.0 34.0 39.0 30.0 40.0 21 35.56928904851113 36.0 34.0 39.0 31.0 40.0 22 36.00298084188083 37.0 34.0 39.0 31.0 40.0 23 36.56338429054928 38.0 35.0 40.0 33.0 41.0 24 36.556765372553485 38.0 35.0 40.0 33.0 41.0 25 35.01483175838621 35.0 34.0 39.0 27.0 41.0 26 35.333000403655674 36.0 34.0 39.0 30.0 41.0 27 35.8987393522879 37.0 35.0 40.0 31.0 41.0 28 36.05542502872165 37.0 35.0 40.0 31.0 41.0 29 36.08491776809464 37.0 35.0 40.0 31.0 41.0 30 35.52848360019458 37.0 35.0 40.0 30.0 41.0 31 35.106404669985615 36.0 34.0 40.0 29.0 41.0 32 34.705212333233284 37.0 34.0 40.0 25.0 41.0 33 34.37259488495813 37.0 34.0 40.0 21.0 41.0 34 33.94383493588085 37.0 34.0 40.0 18.0 41.0 35 33.65527288158398 37.0 33.0 40.0 15.0 41.0 36 33.39963463986669 37.0 33.0 40.0 12.0 41.0 37 33.2934007472805 37.0 33.0 40.0 10.0 41.0 38 33.028173095831995 37.0 33.0 40.0 10.0 41.0 39 32.93318463624414 37.0 33.0 40.0 10.0 41.0 40 32.7287330386992 37.0 33.0 40.0 10.0 41.0 41 32.48260658062246 36.0 32.0 40.0 10.0 41.0 42 32.59791237566888 37.0 32.0 40.0 10.0 41.0 43 32.44567208669282 36.0 32.0 40.0 10.0 41.0 44 32.298891499425565 36.0 32.0 40.0 10.0 41.0 45 32.25375451525094 36.0 32.0 40.0 10.0 41.0 46 32.1212830040262 36.0 31.0 40.0 10.0 41.0 47 32.18414978730451 36.0 31.0 40.0 10.0 41.0 48 32.08131591748864 36.0 31.0 40.0 10.0 41.0 49 32.06213192295352 36.0 31.0 40.0 9.0 41.0 50 32.01298943250153 35.0 31.0 40.0 8.0 41.0 51 30.883493588084914 35.0 28.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 7.0 11 7.0 12 7.0 13 13.0 14 13.0 15 25.0 16 70.0 17 132.0 18 250.0 19 438.0 20 714.0 21 1080.0 22 1613.0 23 2476.0 24 3905.0 25 5682.0 26 6951.0 27 6501.0 28 6009.0 29 5830.0 30 6494.0 31 8042.0 32 10798.0 33 13957.0 34 15911.0 35 18790.0 36 24233.0 37 29016.0 38 20507.0 39 3757.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.33281927611083 19.092913255431238 19.81328337663144 28.76098409182649 2 46.41315710485732 17.7639545835619 20.666652866472774 15.156235445108004 3 26.818779303849222 16.251798337766648 41.31467547119037 15.614746887193764 4 24.398397797489054 22.56021197097819 37.57413291656748 15.467257314965273 5 20.082387157539564 24.77773062711531 39.00814556444518 16.131736650899946 6 21.328544666052558 26.915035656250968 39.331587608805904 12.424832068890568 7 64.90162186778724 5.486612086899821 25.510520922818962 4.101245122493971 8 64.91662957864558 4.273057536458387 25.842760590786302 4.9675522941097325 9 59.90819421012865 6.4791910326340085 28.31023525880539 5.302379498431953 10 35.372139478559674 19.42722295248248 33.86929836364201 11.331339205315835 11 27.071322852086073 20.788267075152405 37.33452705010505 14.805883022656468 12 24.568140182369564 19.57833507560781 41.973462227144296 13.880062514878333 13 19.05772276100479 23.55434343852531 41.92378152913048 15.464152271339412 14 16.008052413136404 25.766687021952663 41.90152871647847 16.32373184843247 15 15.112247327074947 21.78136352815757 47.69502261506774 15.411366529699741 16 16.496061769667865 20.489665379798584 47.1863129676972 15.827959882836353 17 16.963370835360237 20.352525952989637 41.64536261734477 21.03874059430535 18 19.27248827846031 20.533653497831644 43.71125164308559 16.48260658062246 19 20.164670813624934 22.046327250897875 40.80130825838103 16.987693677096164 20 21.425836032996266 22.312325988180135 40.562737406460556 15.699100572363042 21 18.742043325708728 22.883654015338916 42.00451266340292 16.36978999554944 22 18.269041680035606 21.408758293054017 40.68797416603703 19.634225860873343 23 17.196766614570937 22.555036898268423 41.25360961321506 18.99458687394558 24 17.457072771872443 20.4394671745138 43.67761367047207 18.425846383141682 25 16.080503431073208 22.54106420195204 42.10439156670151 19.274040800273244 26 17.287847894262914 24.47395385905172 40.96691058509372 17.271287661591643 27 17.549706573377357 23.45756957885258 42.551517848825775 16.441205998944287 28 15.7068631814277 22.326298684496518 44.00674829481354 17.960089839262242 29 17.37789415941294 20.60662202303942 43.664675988697645 18.350807828849998 30 19.266795698479562 22.410134862394816 40.64812610617179 17.674943332953827 31 19.796723143960175 24.130329031122887 38.5273813097074 17.545566515209536 32 20.411004274610058 24.293343821480693 37.080948487326246 18.214703416583003 33 19.046855108314272 23.99525963339785 37.448896156991005 19.508989101296873 34 17.713756378277115 25.008021362700145 37.20049266692197 20.077729592100766 35 19.26938323483445 24.989908608215945 35.17289917923347 20.567808977716137 36 21.316124491549107 24.991978637299855 35.362824347682086 18.329072523468955 37 18.617324073403232 27.20846227889502 36.17375824130329 18.000455406398462 38 18.127244687787865 27.074427895711935 34.400260823664574 20.39806659283563 39 18.784478921928855 25.826717865386005 34.71387022987673 20.674932982808407 40 20.37788380926752 26.2257159713094 34.05870602481965 19.337694194603433 41 18.713062918534003 26.535185319353737 34.11304428827225 20.638707473840007 42 20.839500294979143 24.991978637299855 34.09027396834926 20.078247099371747 43 20.57298405042591 24.970243331918812 34.49134210335655 19.965430514298728 44 19.36408706542327 25.610399826117558 33.237421985778894 21.78809112268027 45 19.053065195565996 26.45962925779107 32.07717068424812 22.410134862394816 46 20.309572849498537 26.27436165478125 33.241562043946715 20.1745034517735 47 19.261103118498816 25.886748708819358 34.63883167558504 20.213316497096784 48 19.051512673753066 24.356479708539904 35.159961497459044 21.43204612024799 49 19.266278191208585 23.014583354896136 36.15564548681909 21.563492967076186 50 17.934214475713382 24.176387178239857 35.481851020006836 22.407547326039932 51 17.5486715588354 24.558307544220998 33.2783050601861 24.614715836757505 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 294.0 1 375.5 2 457.0 3 5780.0 4 11103.0 5 7604.5 6 4106.0 7 3914.0 8 3722.0 9 3723.5 10 3725.0 11 3579.0 12 3433.0 13 3235.0 14 3037.0 15 2818.5 16 2600.0 17 2434.0 18 2268.0 19 2099.0 20 1930.0 21 1763.5 22 1597.0 23 1607.0 24 1617.0 25 1572.0 26 1693.0 27 1859.0 28 2036.5 29 2214.0 30 2292.5 31 2371.0 32 2623.0 33 2875.0 34 3541.5 35 4208.0 36 4799.5 37 5391.0 38 5687.0 39 5983.0 40 6669.5 41 7356.0 42 8872.0 43 10388.0 44 11414.5 45 12441.0 46 13448.0 47 14455.0 48 15530.5 49 16606.0 50 16217.0 51 15828.0 52 13739.5 53 11651.0 54 10163.0 55 8675.0 56 7591.5 57 6508.0 58 5997.5 59 5487.0 60 5317.0 61 5147.0 62 4543.0 63 3939.0 64 3393.5 65 2848.0 66 2248.0 67 1648.0 68 1508.0 69 1368.0 70 1155.5 71 943.0 72 879.0 73 815.0 74 593.0 75 275.5 76 180.0 77 140.5 78 101.0 79 97.5 80 94.0 81 68.0 82 42.0 83 27.0 84 12.0 85 10.0 86 8.0 87 6.0 88 4.0 89 2.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 193234.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.06574412370494 #Duplication Level Percentage of deduplicated Percentage of total 1 79.99295361127422 35.24949025533809 2 7.854374633000587 6.922177256590454 3 2.6553141514973575 3.510251819038057 4 1.3623018203170876 2.40123373733401 5 0.894891368173811 1.971702702422969 6 0.7868467410452143 2.080379229328172 7 0.6376981796829124 1.9670451369841746 8 0.5143863769817968 1.8133454775039588 9 0.4732824427480916 1.8769988718341493 >10 4.770405167351733 36.267427057350154 >50 0.042278332354668234 1.2932506701719158 >100 0.012918379330593071 1.1804340850988957 >500 0.0011743981209630064 0.26703375182421313 >1k 0.0 0.0 >5k 0.0011743981209630064 3.199229949180786 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6182 3.199229949180786 No Hit CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC 516 0.26703375182421313 No Hit GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC 385 0.19924029932620554 No Hit CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT 363 0.18785513936470807 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCC 303 0.15680470310607864 No Hit TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC 267 0.13817444135090098 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 230 0.11902667232474616 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.20027531386815986 0.0 2 0.0 0.0 0.0 0.9713611476241241 0.0 3 0.0 0.0 0.0 1.2658227848101267 0.0 4 0.0 0.0 0.0 1.7424469813800885 0.0 5 0.0 0.0 0.0 2.922881066478984 0.0 6 0.0 0.0 0.0 3.584255358787791 0.0 7 0.0 0.0 0.0 4.288065247316725 0.0 8 0.0 0.0 0.0 5.312212136580519 0.0 9 0.0 0.0 0.0 5.663082066303032 0.0 10 0.0 0.0 0.0 6.444518045478539 0.0 11 0.0 0.0 0.0 7.906476085989008 0.0 12 0.0 0.0 0.0 8.861277000941863 0.0 13 0.0 0.0 0.0 9.249407454174731 0.0 14 0.0 0.0 0.0 9.41345725907449 0.0 15 0.0 0.0 0.0 9.70636637444756 0.0 16 0.0 0.0 0.0 10.319094983284515 0.0 17 0.0 0.0 0.0 11.05757785896892 0.0 18 5.175072709771572E-4 0.0 0.0 11.902667232474617 0.0 19 5.175072709771572E-4 0.0 0.0 12.314085512901457 0.0 20 5.175072709771572E-4 0.0 0.0 12.748791620522269 0.0 21 5.175072709771572E-4 0.0 0.0 13.29993686411294 0.0 22 5.175072709771572E-4 0.0 0.0 13.916805531117712 0.0 23 5.175072709771572E-4 0.0 0.0 14.488133558276493 0.0 24 5.175072709771572E-4 0.0 0.0 14.932154796774896 0.0 25 5.175072709771572E-4 0.0 0.0 15.340468033575872 0.0 26 5.175072709771572E-4 0.0 0.0 15.706345674156722 0.0 27 5.175072709771572E-4 0.0 0.0 16.06342569113096 0.0 28 5.175072709771572E-4 0.0 0.0 16.40032292453709 0.0 29 5.175072709771572E-4 0.0 0.0 16.78586584141507 0.0 30 5.175072709771572E-4 0.0 0.0 17.215914383597088 0.0010350145419543144 31 5.175072709771572E-4 0.0 0.0 17.61077243135266 0.0010350145419543144 32 5.175072709771572E-4 0.0 0.0 17.992175290062825 0.0010350145419543144 33 5.175072709771572E-4 0.0 0.0 18.35391287247586 0.0010350145419543144 34 5.175072709771572E-4 0.0 0.0 18.737903267540908 0.0010350145419543144 35 5.175072709771572E-4 0.0 0.0 19.160706707929247 0.0010350145419543144 36 5.175072709771572E-4 0.0 0.0 19.531759421219867 0.0010350145419543144 37 5.175072709771572E-4 0.0 0.0 19.911609758117102 0.0010350145419543144 38 5.175072709771572E-4 0.0 0.0 20.253682064233004 0.0010350145419543144 39 5.175072709771572E-4 0.0 0.0 20.621629733897763 0.0010350145419543144 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGGTAAT 35 1.2049168E-7 45.000004 7 ACGGGAA 35 1.2049168E-7 45.000004 5 CGTAAGG 35 1.2049168E-7 45.000004 2 TCGTTGA 20 7.018709E-4 45.0 24 GATACCG 20 7.018709E-4 45.0 27 GATCGTT 25 3.8787257E-5 45.0 9 CTCGTAG 20 7.018709E-4 45.0 15 CCCTAGC 20 7.018709E-4 45.0 21 GGCGTGA 25 3.8787257E-5 45.0 35 CGTTGAT 20 7.018709E-4 45.0 25 TGAACGG 20 7.018709E-4 45.0 2 TACGGGA 40 6.7648216E-9 45.0 4 CGACAGG 20 7.018709E-4 45.0 2 CCTAACA 20 7.018709E-4 45.0 27 TCGATCA 20 7.018709E-4 45.0 17 ATCGTTG 20 7.018709E-4 45.0 23 AAACGCT 20 7.018709E-4 45.0 10 AGCGGGT 25 3.8787257E-5 45.0 4 CGCTCGT 20 7.018709E-4 45.0 13 AGGCCCA 20 7.018709E-4 45.0 1 >>END_MODULE