SRR3550294_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550294_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283248
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	1222	0.4314240524204937	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC	1048	0.36999378636389313	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG	947	0.334335988250579	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	752	0.26549172456645764	No Hit
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	591	0.20865107608879851	No Hit
GAACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCT	307	0.10838558436423205	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	35	1.2075907E-7	45.000004	6
CCTGTTA	20	7.024276E-4	45.0	23
ACGGGTA	40	6.7830115E-9	45.0	5
TCGGAAG	20	7.024276E-4	45.0	1
TGCGATG	25	3.883338E-5	45.0	1
GGTATCA	25	3.883338E-5	45.0	8
GTGTACG	25	3.883338E-5	45.0	1
CGTAAGG	25	3.883338E-5	45.0	2
TCGCATG	30	2.1596898E-6	44.999996	1
TTAGGGT	45	1.9195795E-8	40.0	4
GCGATTA	45	1.9195795E-8	40.0	9
ACGGGCC	40	3.44593E-7	39.375	5
TTACGGG	80	0.0	39.375	3
ATAGCGG	35	6.2316267E-6	38.57143	2
TACGGGT	35	6.2316267E-6	38.57143	4
TATACGG	35	6.2316267E-6	38.57143	2
TGGTCAA	100	0.0	38.25	14
TAAGGGA	150	0.0	37.500004	4
AAGGGTC	90	0.0	37.5	5
TCAAGCG	90	0.0	37.5	17