SRR3550293_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550293_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	361348
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17406	4.816963149097269	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2103	0.5819874470039962	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	783	0.21668862149506846	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC	534	0.14777997941042983	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG	482	0.13338941961765388	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	441	0.12204301670411902	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	415	0.11484773680773105	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	414	0.11457099527325458	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTCGA	20	7.026859E-4	45.0	41
CGGTTAG	20	7.026859E-4	45.0	1
TACGGGT	20	7.026859E-4	45.0	4
CGCGAAG	20	7.026859E-4	45.0	1
TAGCCGT	55	1.8189894E-12	45.0	44
TTAACGG	20	7.026859E-4	45.0	2
ACCCCAT	20	7.026859E-4	45.0	36
AGTACTA	20	7.026859E-4	45.0	31
GCGTAAG	25	3.8854785E-5	45.0	1
CGTTATT	1760	0.0	44.616478	1
CGTTTTT	11895	0.0	44.432537	1
CCGATGA	200	0.0	42.75	18
AATGGGC	85	0.0	42.35294	4
GTTATTT	1890	0.0	42.02381	2
TAACGGG	65	0.0	41.53846	3
ACGGGAT	65	0.0	41.53846	5
AAGGGTA	130	0.0	39.80769	5
TATGGGC	85	0.0	39.705883	4
ATGAATG	250	0.0	39.6	21
GTTTTTT	13450	0.0	39.479557	2