SRR3550290_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550290_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	263491
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5864	2.225502958355314	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	456	0.17306093946282797	No Hit
GCTTTTGGGATAAATAAACCTGTTAAAATTTTCTGGACAATGCCAGCATTT	294	0.11157876360103382	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGCC	20	7.0233777E-4	45.000004	41
TACCCCT	20	7.0233777E-4	45.000004	15
ACGCCTC	20	7.0233777E-4	45.000004	36
CGAAATC	20	7.0233777E-4	45.000004	12
ATTACGG	20	7.0233777E-4	45.000004	2
GAATCGG	20	7.0233777E-4	45.000004	2
TGACGTC	20	7.0233777E-4	45.000004	26
ACCTATT	20	7.0233777E-4	45.000004	32
CTAACGA	30	2.1591113E-6	45.000004	43
CTCGGAA	20	7.0233777E-4	45.000004	29
CTACGAC	20	7.0233777E-4	45.000004	13
TACGACT	20	7.0233777E-4	45.000004	14
ATGACGT	20	7.0233777E-4	45.000004	25
CGCAGAA	20	7.0233777E-4	45.000004	19
GCCTAAC	20	7.0233777E-4	45.000004	41
CGTAAGG	20	7.0233777E-4	45.000004	2
TACTACG	20	7.0233777E-4	45.000004	1
CCAACGG	30	2.1591113E-6	45.000004	2
CCTATTC	20	7.0233777E-4	45.000004	33
CGACTCA	20	7.0233777E-4	45.000004	16