SRR3550289_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550289_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	932519
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12340	1.3232974341541566	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	5047	0.5412222163837949	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGC	3617	0.38787413446803765	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCG	3555	0.38122547637099086	No Hit
GAACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	1228	0.131686324889895	RNA PCR Primer, Index 27 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	1102	0.11817453585396115	RNA PCR Primer, Index 27 (95% over 23bp)
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	978	0.10487721965986752	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	20	7.0326E-4	45.000004	39
ATTAACG	20	7.0326E-4	45.000004	1
ACTACCG	25	3.8902384E-5	45.0	1
AACACGT	435	0.0	40.344826	41
CGTTTTT	3365	0.0	40.118874	1
TCGACGG	45	1.927583E-8	40.000004	2
TCAAGCG	455	0.0	39.065933	17
TAATACG	75	0.0	39.000004	4
ACACGTG	465	0.0	38.225807	42
ACACGAC	465	0.0	38.225807	26
CACGTGA	465	0.0	38.225807	43
CGTTATT	265	0.0	38.207546	1
AAACACG	460	0.0	38.152172	40
GCGATTA	130	0.0	38.07692	9
CGAAAGG	215	0.0	37.67442	2
CGACCAA	480	0.0	37.499996	29
TCCGTTA	30	1.1397568E-4	37.499996	12
GCGAGAC	465	0.0	37.258064	21
CACGACC	480	0.0	37.031246	27
CGAGACA	465	0.0	36.774193	22