SRR3550286_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550286_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	644263
Sequences flagged as poor quality	0
Sequence length	51
%GC	31

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49181	7.633683759582654	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1078	0.16732297214025948	No Hit
GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	1060	0.16452908206741657	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	949	0.14730009328488522	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	915	0.14202274536951526	No Hit
CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	856	0.13286499457519677	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	771	0.11967162478677186	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT	726	0.11268689960466456	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA	670	0.1039947971558199	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGCGC	25	3.8888895E-5	45.000004	27
AGCTTGA	25	3.8888895E-5	45.000004	28
CGCGCAA	25	3.8888895E-5	45.000004	18
GCGATAT	30	2.1640099E-6	45.000004	9
GCAATTG	30	2.1640099E-6	45.000004	1
CGATATG	30	2.1640099E-6	45.000004	10
CGAACTA	20	7.030976E-4	45.0	31
ACCCTAC	20	7.030976E-4	45.0	16
GCGTACG	20	7.030976E-4	45.0	1
CGTTTTT	28200	0.0	44.585106	1
CACGACC	55	6.002665E-11	40.909092	27
AACACGT	55	6.002665E-11	40.909092	41
GTTTTTT	31110	0.0	40.63163	2
CGTAAGG	50	1.0804797E-9	40.500004	2
TAGACGG	40	3.4550612E-7	39.375	2
GTAAGTC	40	3.4550612E-7	39.375	10
TACGGGA	100	0.0	38.250004	4
GGGCGAT	510	0.0	37.941177	7
AGGGCGA	250	0.0	37.8	6
GCGCAAT	30	1.139365E-4	37.500004	19