SRR3550285_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550285_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	408807
Sequences flagged as poor quality	0
Sequence length	51
%GC	31

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30190	7.384902900390649	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	636	0.15557463546367845	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	568	0.13894086940781347	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	550	0.13453781368714332	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	530	0.12964552955306538	No Hit
GCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	466	0.11399022032401598	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA	442	0.10811947936312245	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCATC	20	7.027948E-4	45.0	8
GTACCGG	20	7.027948E-4	45.0	3
CACGGGC	25	3.886381E-5	45.0	4
CCGATAG	25	3.886381E-5	45.0	11
GGCCGTA	20	7.027948E-4	45.0	11
TAGCGCG	25	3.886381E-5	45.0	1
CGATTGT	20	7.027948E-4	45.0	10
CACGAGG	25	3.886381E-5	45.0	2
TCGATGG	25	3.886381E-5	45.0	2
AACGGCA	20	7.027948E-4	45.0	17
TACGAGG	35	1.2093551E-7	45.0	2
GCGGGAC	25	3.886381E-5	45.0	5
CTTGACG	20	7.027948E-4	45.0	1
ACTAATC	50	2.1827873E-11	45.0	10
GGCCTAT	20	7.027948E-4	45.0	8
CGATAGT	20	7.027948E-4	45.0	38
CGCGAGG	60	0.0	44.999996	2
TGCGCGG	30	2.162058E-6	44.999996	2
CGTTTTT	18100	0.0	44.58978	1
GTTTTTT	19850	0.0	40.930733	2