SRR3550284_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550284_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	520148
Sequences flagged as poor quality	0
Sequence length	51
%GC	31

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40531	7.79220529541592	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	835	0.16053123341818099	No Hit
CCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	783	0.15053407876219846	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	747	0.1436129716926721	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	693	0.13323131108838254	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	616	0.11842783207856226	No Hit
GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	577	0.11092996608657536	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	20	7.0297194E-4	45.000004	26
TTACGAG	20	7.0297194E-4	45.000004	1
TCAAGCG	20	7.0297194E-4	45.000004	17
CCGTTAA	20	7.0297194E-4	45.000004	30
AACACGT	20	7.0297194E-4	45.000004	41
TTGTGCG	25	3.8878512E-5	44.999996	1
TCGTAGG	25	3.8878512E-5	44.999996	2
TGTAGCG	25	3.8878512E-5	44.999996	1
CGTTTTT	23675	0.0	44.524815	1
GTTTTTT	25840	0.0	40.994583	2
TGCGAGG	100	0.0	40.499996	2
ACGGGAT	45	1.9248546E-8	40.000004	5
CGAGATA	85	0.0	39.705883	19
TGCGGGT	70	0.0	38.571426	4
TAGTAGG	65	9.094947E-12	38.07692	2
AACGGGA	95	0.0	37.894737	4
GCGTTAG	30	1.1390629E-4	37.499996	1
CGTTAGG	60	1.546141E-10	37.499996	2
GTGTACG	30	1.1390629E-4	37.499996	1
CCGCCCA	60	1.546141E-10	37.499996	36