##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550284_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 520148 Sequences flagged as poor quality 0 Sequence length 51 %GC 31 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.28525919545975 33.0 31.0 34.0 30.0 34.0 2 32.40305836031283 34.0 31.0 34.0 31.0 34.0 3 32.32929473918961 34.0 31.0 34.0 30.0 34.0 4 35.97275775356245 37.0 35.0 37.0 35.0 37.0 5 36.04110945346324 37.0 35.0 37.0 35.0 37.0 6 35.99342879334343 37.0 35.0 37.0 35.0 37.0 7 36.22657974268862 37.0 37.0 37.0 35.0 37.0 8 36.07961003406723 37.0 37.0 37.0 35.0 37.0 9 38.012092712074256 39.0 39.0 39.0 35.0 39.0 10 37.63273914347455 39.0 38.0 39.0 35.0 39.0 11 37.595488207202564 39.0 37.0 39.0 35.0 39.0 12 37.612106554288395 39.0 37.0 39.0 35.0 39.0 13 37.58763275067865 39.0 37.0 39.0 35.0 39.0 14 38.913217007467104 41.0 38.0 41.0 35.0 41.0 15 39.029991463967946 41.0 39.0 41.0 35.0 41.0 16 38.942585571798794 41.0 38.0 41.0 35.0 41.0 17 38.90475403154487 41.0 38.0 41.0 35.0 41.0 18 38.121248183209396 39.0 38.0 40.0 35.0 41.0 19 37.25190907203334 37.0 37.0 40.0 34.0 41.0 20 36.49415743211547 35.0 35.0 40.0 34.0 41.0 21 36.38768196744004 35.0 35.0 40.0 33.0 41.0 22 36.43075624629913 35.0 35.0 40.0 33.0 41.0 23 36.42179533517383 35.0 35.0 40.0 33.0 41.0 24 36.283334743188476 35.0 35.0 40.0 33.0 41.0 25 36.06047509554973 35.0 35.0 40.0 33.0 41.0 26 36.1054738266801 35.0 35.0 40.0 33.0 41.0 27 36.06883809992541 35.0 35.0 40.0 33.0 41.0 28 35.87405123157255 35.0 35.0 40.0 33.0 41.0 29 35.63964102524666 35.0 35.0 40.0 33.0 41.0 30 35.098416219998924 35.0 35.0 40.0 31.0 41.0 31 34.42578458438752 35.0 35.0 40.0 23.0 41.0 32 33.304765182217366 35.0 33.0 40.0 18.0 41.0 33 31.83457208333013 35.0 31.0 40.0 10.0 41.0 34 30.617704960895747 35.0 23.0 40.0 7.0 41.0 35 29.84243907503249 35.0 21.0 40.0 7.0 41.0 36 29.335429531594855 35.0 18.0 40.0 7.0 41.0 37 29.011141059852196 35.0 18.0 40.0 7.0 41.0 38 28.789609880264848 35.0 18.0 40.0 7.0 41.0 39 28.57888524035467 35.0 16.0 40.0 7.0 41.0 40 28.384936594969123 35.0 15.0 40.0 7.0 41.0 41 28.14710620823304 35.0 15.0 40.0 7.0 41.0 42 27.988999284818934 35.0 15.0 40.0 7.0 41.0 43 27.820499165622092 35.0 15.0 40.0 7.0 41.0 44 27.635649853503235 35.0 12.0 40.0 7.0 41.0 45 27.675644239716387 35.0 15.0 40.0 7.0 41.0 46 27.609739920176565 35.0 15.0 39.0 7.0 41.0 47 27.647763713404647 34.0 15.0 39.0 7.0 41.0 48 27.61232572267893 34.0 15.0 39.0 7.0 41.0 49 27.536355037412427 34.0 15.0 39.0 7.0 41.0 50 27.457054530633588 34.0 15.0 39.0 7.0 41.0 51 26.843459938325246 33.0 15.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 5.0 11 6.0 12 7.0 13 15.0 14 20.0 15 49.0 16 84.0 17 197.0 18 423.0 19 741.0 20 1202.0 21 1847.0 22 2916.0 23 4467.0 24 8407.0 25 17177.0 26 31502.0 27 39670.0 28 36668.0 29 29117.0 30 22005.0 31 17621.0 32 15640.0 33 16043.0 34 23838.0 35 31784.0 36 34558.0 37 34403.0 38 60945.0 39 88754.0 40 33.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.79706545060252 11.837976883502389 13.529418550104971 52.83553911579012 2 63.208740589216916 12.965732829886878 13.93353430177565 9.891992279120558 3 18.52011350615594 13.248152448918384 58.58967063220468 9.642063412720994 4 16.366880195636625 14.314195190599598 58.249190614978815 11.069733998784962 5 14.672939240370047 16.450510239393402 57.893522612794825 10.983027907441729 6 15.200096895498975 19.46868968062936 56.90034374831778 8.43086967555388 7 45.06698093619509 3.623007297922899 48.627506017518094 2.682505748363927 8 45.60221321623846 3.3286679944938746 48.64557779708852 2.423540992179149 9 42.08917461953136 4.786137791551635 49.839661019555976 3.285026569361028 10 24.434391750040373 14.135976683559296 53.704330305989835 7.7253012604104985 11 17.77186493075048 15.237586225458907 56.95936541138291 10.0311834324077 12 17.969116482231982 13.583826141790414 58.1032706075963 10.343786768381307 13 14.30554380676269 13.893545683151718 59.120288840868376 12.680621669217224 14 11.400793620277305 16.277098056706937 59.30946576743542 13.012642555580333 15 11.390411959673017 16.046778993671033 61.33908041557403 11.223728631081922 16 12.504902450840916 14.71850319524443 61.60823457938894 11.168359774525712 17 12.563539607957736 15.511546713627661 59.2723609434238 12.65255273499081 18 12.651783723094196 16.049855041257487 59.22737374747188 12.070987488176442 19 14.443581442204911 15.83856902266278 58.52084406745772 11.197005467674586 20 15.98102847651053 14.940170874443428 59.17162038496736 9.907180264078686 21 14.809823357967348 15.288533263609589 58.71098225889555 11.190661119527519 22 13.815106469697087 14.92940470789083 58.83037135584488 12.425117466567208 23 14.18288640925275 15.097626060275152 59.20968647384976 11.509801056622345 24 13.578250805539962 14.372447841768112 59.63552681159977 12.41377454109215 25 12.732337719264516 15.844336611887385 58.29667709959473 13.126648569253366 26 12.966501841783492 17.062259203149875 58.3497389204611 11.621500034605535 27 12.955543422256744 17.096480232549197 58.72809277359521 11.219883571598853 28 11.994278551489192 16.623153410183257 58.97186954482186 12.410698493505695 29 12.864223259533825 15.988718595476673 58.62677545621631 12.520282688773197 30 13.23257995801195 16.855395002960698 57.28062013119343 12.631404907833923 31 13.222967309304275 17.72207141044472 55.44037466259603 13.614586617654975 32 14.766374185808653 18.997862146927414 53.44882610333982 12.786937563924115 33 14.395710451640687 21.390450410267846 50.754016164630066 13.4598229734614 34 14.562778286180086 22.5216669101871 47.74737190184332 15.16818290178949 35 15.629013280835455 23.396610195559724 44.583849212147314 16.390527311457507 36 15.681113836831056 26.573398340472327 42.19414474341918 15.551343079277435 37 16.71274329613879 26.21426978475357 42.202796127256086 14.87019079185155 38 16.13483085583334 26.092958158062707 41.576243684489796 16.195967301614157 39 16.710628513423103 25.856871505802193 41.57278313095504 15.859716849819666 40 17.1403139106562 25.27242246437552 41.85462599106408 15.732637633904195 41 15.600559840660736 26.70835992832809 40.89393787921899 16.797142351792182 42 16.305551496881655 26.679521982205063 39.71427362981305 17.300652891100228 43 17.018041019094564 26.95982681852088 39.55316563747241 16.46896652491214 44 16.125602713073974 27.302806124410743 39.58219583656959 16.98939532594569 45 15.829917638825872 25.91800795158301 39.77810161723202 18.4739727923591 46 15.110314756569284 26.174665672077946 40.583064820012765 18.131954751340004 47 15.57229865346017 25.738635926697782 41.92172227904366 16.76734314079839 48 15.5986373109192 24.111022247514168 42.590762629097874 17.69957781246876 49 15.0784007628598 24.53878511500573 42.75513892199913 17.627675200135347 50 14.500296069580196 23.807839307274083 42.96257988111076 18.72928474203496 51 14.354376062197682 23.029214761952367 42.69784753570138 19.918561640148575 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 139.0 1 529.0 2 919.0 3 37137.0 4 73355.0 5 49767.0 6 26179.0 7 25155.5 8 24132.0 9 22930.0 10 21728.0 11 20534.0 12 19340.0 13 17904.5 14 16469.0 15 15016.0 16 13563.0 17 12460.5 18 11358.0 19 10358.5 20 9359.0 21 8384.0 22 7409.0 23 6774.0 24 6139.0 25 5633.5 26 5036.0 27 4944.0 28 5414.0 29 5884.0 30 6446.5 31 7009.0 32 7815.0 33 8621.0 34 8828.5 35 9036.0 36 9731.5 37 10427.0 38 10881.0 39 11335.0 40 12555.5 41 13776.0 42 14736.0 43 15696.0 44 17342.5 45 18989.0 46 19598.0 47 20207.0 48 21928.0 49 23649.0 50 23133.5 51 22618.0 52 20547.0 53 18476.0 54 17354.5 55 16233.0 56 15263.5 57 14294.0 58 14150.5 59 14007.0 60 14347.0 61 14687.0 62 13629.5 63 12572.0 64 10261.0 65 7950.0 66 6621.5 67 5293.0 68 4239.5 69 3186.0 70 2732.5 71 2279.0 72 1962.0 73 1645.0 74 1345.5 75 767.5 76 489.0 77 342.0 78 195.0 79 164.5 80 134.0 81 133.0 82 132.0 83 101.5 84 71.0 85 45.5 86 20.0 87 22.5 88 25.0 89 14.0 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 520148.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.1623410618232 #Duplication Level Percentage of deduplicated Percentage of total 1 82.18107243836106 33.00584260095855 2 6.861420086629841 5.511413873753444 3 2.3316718321013075 2.809361980952966 4 1.2068139662890471 1.938738964490893 5 0.7521988558615063 1.5105033497711502 6 0.5945223885415132 1.432644656249641 7 0.507738152756136 1.4274367002764414 8 0.4345282438278751 1.3961337223688153 9 0.4094833271464926 1.4801228139588805 >10 4.5718987424276385 34.41301866242254 >50 0.08439595492303949 2.387506621775614 >100 0.059940308894187666 3.868311527383656 >500 0.00383617976922801 1.013202576200608 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.7952247115350127E-4 7.80576194943677 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40531 7.79220529541592 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 835 0.16053123341818099 No Hit CCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC 783 0.15053407876219846 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 747 0.1436129716926721 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 693 0.13323131108838254 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA 616 0.11842783207856226 No Hit GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC 577 0.11092996608657536 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.9225297415351015E-4 0.0 0.0 0.08766735621400062 0.0 2 1.9225297415351015E-4 0.0 0.0 0.44737267085521815 0.0 3 1.9225297415351015E-4 0.0 0.0 0.6136714934980044 0.0 4 1.9225297415351015E-4 0.0 0.0 0.7622830425186677 0.0 5 1.9225297415351015E-4 0.0 0.0 1.1619769757838154 0.0 6 1.9225297415351015E-4 0.0 0.0 1.3665341402831501 0.0 7 1.9225297415351015E-4 0.0 0.0 1.6003137568538186 0.0 8 1.9225297415351015E-4 0.0 0.0 1.9488683989941324 0.0 9 1.9225297415351015E-4 0.0 0.0 2.0657582072794667 0.0 10 1.9225297415351015E-4 0.0 0.0 2.3214546629036352 0.0 11 1.9225297415351015E-4 0.0 0.0 2.7955504971661913 0.0 12 1.9225297415351015E-4 0.0 0.0 3.1383375500819 0.0 13 1.9225297415351015E-4 0.0 0.0 3.2840653044902606 0.0 14 1.9225297415351015E-4 0.0 0.0 3.3480855448833795 0.0 15 1.9225297415351015E-4 0.0 0.0 3.472665472134854 0.0 16 1.9225297415351015E-4 0.0 0.0 3.7443189246137636 0.0 17 1.9225297415351015E-4 0.0 0.0 4.032890638818182 0.0 18 1.9225297415351015E-4 0.0 0.0 4.308196897806009 0.0 19 1.9225297415351015E-4 0.0 0.0 4.509293508770581 0.0 20 1.9225297415351015E-4 0.0 0.0 4.698470435337635 0.0 21 3.845059483070203E-4 0.0 0.0 4.96877811699747 0.0 22 3.845059483070203E-4 0.0 0.0 5.222744295854257 0.0 23 3.845059483070203E-4 0.0 0.0 5.481324546090728 0.0 24 5.767589224605305E-4 0.0 0.0 5.694533094426971 0.0 25 5.767589224605305E-4 0.0 0.0 5.890438875089398 0.0 26 5.767589224605305E-4 0.0 0.0 6.066734852388167 0.0 27 5.767589224605305E-4 0.0 0.0 6.232264663134338 0.0 28 5.767589224605305E-4 0.0 0.0 6.41144443504541 0.0 29 5.767589224605305E-4 0.0 0.0 6.6036974091989205 0.0 30 5.767589224605305E-4 0.0 0.0 6.8115228742588645 0.0 31 5.767589224605305E-4 0.0 0.0 7.03088351776802 0.0 32 5.767589224605305E-4 0.0 0.0 7.231211116835977 0.0 33 5.767589224605305E-4 0.0 0.0 7.417119742842422 0.0 34 5.767589224605305E-4 0.0 0.0 7.6132177764790026 0.0 35 5.767589224605305E-4 0.0 0.0 7.829310119427547 0.0 36 5.767589224605305E-4 0.0 0.0 8.057129893799457 0.0 37 5.767589224605305E-4 0.0 0.0 8.27802856110184 0.0 38 5.767589224605305E-4 0.0 0.0 8.500272999223299 0.0 39 5.767589224605305E-4 0.0 0.0 8.707137199412475 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGAC 20 7.0297194E-4 45.000004 26 TTACGAG 20 7.0297194E-4 45.000004 1 TCAAGCG 20 7.0297194E-4 45.000004 17 CCGTTAA 20 7.0297194E-4 45.000004 30 AACACGT 20 7.0297194E-4 45.000004 41 TTGTGCG 25 3.8878512E-5 44.999996 1 TCGTAGG 25 3.8878512E-5 44.999996 2 TGTAGCG 25 3.8878512E-5 44.999996 1 CGTTTTT 23675 0.0 44.524815 1 GTTTTTT 25840 0.0 40.994583 2 TGCGAGG 100 0.0 40.499996 2 ACGGGAT 45 1.9248546E-8 40.000004 5 CGAGATA 85 0.0 39.705883 19 TGCGGGT 70 0.0 38.571426 4 TAGTAGG 65 9.094947E-12 38.07692 2 AACGGGA 95 0.0 37.894737 4 GCGTTAG 30 1.1390629E-4 37.499996 1 CGTTAGG 60 1.546141E-10 37.499996 2 GTGTACG 30 1.1390629E-4 37.499996 1 CCGCCCA 60 1.546141E-10 37.499996 36 >>END_MODULE