SRR3550281_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550281_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	389208
Sequences flagged as poor quality	0
Sequence length	51
%GC	32

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30447	7.822809397545785	No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	1110	0.28519454893013507	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	1093	0.28082670448706093	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	652	0.16751968099319645	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	578	0.14850671106452076	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	565	0.14516659472569937	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	559	0.14362500256932026	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	525	0.13488931368317197	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	410	0.10534213068590574	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA	399	0.10251587839921071	No Hit
TCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	392	0.10071735421676842	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	35	1.209155E-7	45.000004	2
TTGATCA	20	7.027532E-4	45.0	13
AGGTAAG	20	7.027532E-4	45.0	1
ATTCGGA	20	7.027532E-4	45.0	25
ATGTCCA	20	7.027532E-4	45.0	27
CTACGGG	25	3.886035E-5	45.0	3
TACGAGG	25	3.886035E-5	45.0	2
TGTTACG	20	7.027532E-4	45.0	1
GCGATCG	25	3.886035E-5	45.0	9
ATTGGTC	20	7.027532E-4	45.0	38
ACGTAAG	20	7.027532E-4	45.0	1
GACGAGG	25	3.886035E-5	45.0	2
CGTCCTT	20	7.027532E-4	45.0	26
TTACCGG	20	7.027532E-4	45.0	2
TTCGAGT	25	3.886035E-5	45.0	15
GTAGTAA	20	7.027532E-4	45.0	9
CGAAGGC	20	7.027532E-4	45.0	32
TAGGGAC	65	0.0	44.999996	5
CGTTTTT	16775	0.0	44.62444	1
GTTTTTT	18205	0.0	41.27987	2