SRR3550272_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550272_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	969506
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	3643	0.3757583759151568	No Hit
CCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	3245	0.33470654126947125	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	2294	0.23661534843518245	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2157	0.22248444052950675	No Hit
TCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	1133	0.11686363983306963	No Hit
ACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	1076	0.1109843569818031	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	35	1.2116652E-7	45.000004	25
AGATCGC	20	7.0327386E-4	45.000004	29
CGCGGAT	25	3.890352E-5	45.000004	23
TTAGCCG	35	1.2116652E-7	45.000004	1
GACGTGC	20	7.0327386E-4	45.000004	17
CGCGACT	25	3.890352E-5	45.000004	31
CGACACG	20	7.0327386E-4	45.000004	27
ATCGTCC	40	6.8139343E-9	45.000004	26
AACGGCG	25	3.890352E-5	45.000004	13
TCGGACT	25	3.890352E-5	45.000004	15
CTAAACG	20	7.0327386E-4	45.000004	1
TGCGACC	20	7.0327386E-4	45.000004	17
ACGGACT	20	7.0327386E-4	45.000004	5
TTGCGAA	25	3.890352E-5	45.000004	44
ACGTCAC	20	7.0327386E-4	45.000004	14
TATAGCG	20	7.0327386E-4	45.000004	1
ATTGCCG	35	1.2116652E-7	45.000004	1
TTCGCGA	25	3.890352E-5	45.000004	29
CGTTTAT	20	7.0327386E-4	45.000004	12
TCGAACG	20	7.0327386E-4	45.000004	1