SRR3550269_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550269_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	898097
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGCT	4840	0.538917288444344	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	3892	0.4333607616994601	TruSeq Adapter, Index 15 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	2755	0.30675973753391894	TruSeq Adapter, Index 15 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	2042	0.22736964938085752	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCC	1799	0.20031243841144106	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1789	0.19919897293944863	No Hit
ACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	1220	0.13584278758307844	No Hit
GCCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTG	1043	0.11613444872881215	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCCG	20	7.032462E-4	45.0	10
ATTACGC	20	7.032462E-4	45.0	45
ATTCGCG	20	7.032462E-4	45.0	1
ACGATAC	20	7.032462E-4	45.0	22
GTATGCG	25	3.8901213E-5	45.0	1
CGCTAGA	20	7.032462E-4	45.0	33
ACGGAAC	25	3.8901213E-5	45.0	1
CGAATTA	20	7.032462E-4	45.0	25
CGAATAT	70	0.0	45.0	14
TTAACGA	20	7.032462E-4	45.0	22
AATTACG	20	7.032462E-4	45.0	44
TTACGAG	35	1.2115379E-7	45.0	1
TACAGCG	25	3.8901213E-5	45.0	1
CGATACT	20	7.032462E-4	45.0	10
CCCGCAA	20	7.032462E-4	45.0	40
AAATGCG	45	3.8380676E-10	45.0	1
ACGAATT	20	7.032462E-4	45.0	24
CCCGATC	25	3.8901213E-5	45.0	41
TCGTTCA	30	2.1649703E-6	44.999996	16
TCGGTTA	30	2.1649703E-6	44.999996	29