SRR3550265_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550265_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	772047
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	3902	0.5054096447496073	No Hit
CTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGCT	3481	0.45087928584658704	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	2043	0.26462119534173434	No Hit
TCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	1554	0.20128308250663496	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCC	1350	0.17485982071039716	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1249	0.16177771560539708	No Hit
ACTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	1127	0.14597556884490193	No Hit
GCCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTG	854	0.11061502732346605	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACCG	30	2.164572E-6	45.000004	1
ACGATAG	30	2.164572E-6	45.000004	1
TGCGAAT	30	2.164572E-6	45.000004	27
ATGCGAA	30	2.164572E-6	45.000004	26
TGATAGT	25	3.8896113E-5	45.0	13
CGAACGG	35	1.2112287E-7	45.0	2
CTCGTAG	25	3.8896113E-5	45.0	1
ACGCATC	20	7.031846E-4	45.0	17
TACGATG	20	7.031846E-4	45.0	1
CTACGAA	75	0.0	45.0	11
TTAACGG	40	6.8102963E-9	45.0	2
ATCGGGT	20	7.031846E-4	45.0	4
ATTGCGC	25	3.8896113E-5	45.0	2
AACACGT	45	3.8380676E-10	45.0	41
CGATAGC	55	6.002665E-11	40.909092	10
GTGTACG	45	1.9268555E-8	40.0	1
AATACGG	45	1.9268555E-8	40.0	2
ATAGGGT	170	0.0	39.705883	4
TACGAAT	85	0.0	39.705883	12
CGAATAT	85	0.0	39.705883	14