SRR3550262_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550262_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	885324
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	4262	0.48140567746949137	No Hit
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT	2864	0.3234973862676263	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG	2137	0.24138055672273656	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC	2137	0.24138055672273656	No Hit
CCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	2038	0.23019820992088774	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	2026	0.22884277394490607	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1858	0.2098666702811626	No Hit
TCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	1716	0.19382734456537945	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCC	1256	0.14186896548608194	No Hit
ACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	1191	0.1345270206161812	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1037	0.11713225892441637	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	20	7.0324074E-4	45.0	12
GACGTCG	25	3.8900766E-5	45.0	19
CGACAGC	20	7.0324074E-4	45.0	26
AAACGTA	20	7.0324074E-4	45.0	27
TAATTCG	25	3.8900766E-5	45.0	23
CGCTAAG	20	7.0324074E-4	45.0	2
ACTCGAT	20	7.0324074E-4	45.0	42
TCGTACT	35	1.2115015E-7	45.0	27
CGTGTAA	20	7.0324074E-4	45.0	14
TAGATCG	35	1.2115015E-7	45.0	30
GTATACG	45	3.8380676E-10	45.0	1
ACGTATA	20	7.0324074E-4	45.0	29
CGACTTG	20	7.0324074E-4	45.0	14
TAGTGCG	25	3.8900766E-5	45.0	1
GCGCTAA	20	7.0324074E-4	45.0	1
CCACGAA	20	7.0324074E-4	45.0	42
TATCGAG	20	7.0324074E-4	45.0	1
AATACGG	50	2.1827873E-11	45.0	2
CCGTTAA	20	7.0324074E-4	45.0	30
ACCCACG	20	7.0324074E-4	45.0	29