SRR3550259_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550259_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	957695
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	2678	0.27962973598066193	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	2572	0.2685614940038321	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	1825	0.19056171328032412	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1775	0.18534084442332893	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1476	0.15412004865849777	No Hit
TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	1100	0.11485911485389398	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	45	3.8380676E-10	45.0	1
CGCTATT	20	7.0326973E-4	45.0	39
TATTACG	20	7.0326973E-4	45.0	1
ACGCTAA	35	1.211647E-7	45.0	25
CGGTCTA	75	0.0	45.0	31
GTAACGA	20	7.0326973E-4	45.0	20
TACCGGA	20	7.0326973E-4	45.0	23
ACTACGG	60	0.0	44.999996	2
TTCGAAG	65	0.0	41.538464	1
TTAATCG	60	3.6379788E-12	41.249996	20
TATTGCG	45	1.927765E-8	40.0	1
AATGCGA	80	0.0	39.375	25
ATGCGAA	80	0.0	39.375	26
CGAAAGG	115	0.0	39.130432	2
TGCGTAG	115	0.0	39.130432	1
ATATGCG	35	6.2471972E-6	38.571426	1
TCGGATG	35	6.2471972E-6	38.571426	1
GTGCTAG	140	0.0	38.571426	1
TATAGCG	35	6.2471972E-6	38.571426	1
CTCACGA	100	0.0	38.25	24