SRR3550252_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550252_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	368310
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	396	0.10751812332002932	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	382	0.1037169775460889	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	40	6.7939254E-9	45.000004	2
ATTCGAT	20	7.027036E-4	45.000004	12
CTAAGCG	20	7.027036E-4	45.000004	1
TCGTGCG	20	7.027036E-4	45.000004	1
AACGAGC	40	6.7939254E-9	45.000004	15
TTAGTGC	30	2.1614705E-6	45.000004	16
CACAACG	40	6.7939254E-9	45.000004	12
TAGCACG	25	3.8856266E-5	45.0	1
CGTAAGG	65	0.0	41.538464	2
TACACGC	65	0.0	41.538464	35
CGTCATA	50	1.0768417E-9	40.5	38
TACGGGA	145	0.0	40.34483	4
CAACGAG	45	1.9221261E-8	40.0	14
TCGATGG	45	1.9221261E-8	40.0	1
TTCGTGG	40	3.4496952E-7	39.375004	2
CTACGGG	100	0.0	38.25	3
CGGGAAT	65	9.094947E-12	38.076927	6
ACGTTGG	30	1.1384161E-4	37.500004	2
CGACCGG	30	1.1384161E-4	37.500004	33
ATGCTAC	30	1.1384161E-4	37.500004	11