SRR3550250_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550250_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	608415
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1851	0.30423313034688493	No Hit
GCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGC	1417	0.23290024078959265	TruSeq Adapter, Index 19 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGCT	920	0.15121257694172563	TruSeq Adapter, Index 13 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGC	779	0.12803760591043942	TruSeq Adapter, Index 19 (95% over 23bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	645	0.10601316535588372	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTATT	30	2.1638098E-6	45.000004	43
CTCACGA	50	2.1827873E-11	45.0	24
AGATCGG	20	7.0306665E-4	45.0	2
ACGTTAG	20	7.0306665E-4	45.0	1
TAGCGAA	20	7.0306665E-4	45.0	27
ACCGACA	20	7.0306665E-4	45.0	23
ACTTACG	25	3.888634E-5	45.0	34
CGTTCGC	20	7.0306665E-4	45.0	13
CGGATGT	20	7.0306665E-4	45.0	39
CGCTATA	20	7.0306665E-4	45.0	25
ACAGCGA	20	7.0306665E-4	45.0	21
GGACGTA	20	7.0306665E-4	45.0	8
AATTACG	20	7.0306665E-4	45.0	1
ACGTATG	20	7.0306665E-4	45.0	1
CGGTCTA	50	2.1827873E-11	45.0	31
CCAACGC	20	7.0306665E-4	45.0	32
TAGTGCG	25	3.888634E-5	45.0	1
TATGTCG	35	1.2106648E-7	45.0	1
GCGTAAG	70	0.0	45.0	1
GGCCGAT	60	3.6379788E-12	41.250004	8