SRR3550248_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550248_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1050624
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	2501	0.2380490070662768	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1812	0.172468932748538	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	1794	0.17075566520467836	No Hit
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	1666	0.15857242933723198	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	1093	0.10403341252436649	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGCGT	25	3.8905764E-5	45.0	42
CGAAATT	20	7.0330093E-4	45.0	43
CCGTACT	20	7.0330093E-4	45.0	35
TGCGACG	40	6.8139343E-9	45.0	1
GCGATAT	90	0.0	45.0	9
AACTCGA	25	3.8905764E-5	45.0	12
TGGTCGA	20	7.0330093E-4	45.0	35
GTACGAG	65	0.0	44.999996	1
CGGTCTA	150	0.0	42.000004	31
CGTTCGG	260	0.0	40.673077	45
CACGACG	155	0.0	40.64516	26
ACGGTCT	155	0.0	40.64516	30
CACAACG	45	1.9279469E-8	40.0	12
GCCAACG	45	1.9279469E-8	40.0	1
CTCGTAG	40	3.4578443E-7	39.375	1
TAGTAAG	120	0.0	39.374996	1
CGTAAGG	195	0.0	39.23077	2
GCGTATG	75	0.0	39.000004	1
TTTCGCA	110	0.0	38.863636	14
GGCGATA	250	0.0	38.699997	8