SRR3550245_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550245_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	795755
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1365	0.1715352087011706	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1100	0.13823350151742686	No Hit
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	916	0.11511080671814818	No Hit
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	815	0.10241845794245717	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATCG	30	2.1646556E-6	45.000004	12
ACTCGAT	20	7.031976E-4	45.000004	41
CGTAATG	20	7.031976E-4	45.000004	22
TTACGCG	20	7.031976E-4	45.000004	16
CCGAATC	30	2.1646556E-6	45.000004	11
AGGCGTA	25	3.8897197E-5	45.0	33
TCTAGCG	35	1.2113014E-7	45.0	1
GTATGCG	25	3.8897197E-5	45.0	1
CGTACAT	25	3.8897197E-5	45.0	35
GCTACGA	150	0.0	42.000004	10
TCGTTTA	70	0.0	41.785713	38
CATCGTT	70	0.0	41.785713	36
GTTGATG	65	0.0	41.53846	1
TGCGTAG	55	6.002665E-11	40.909092	1
CATGCGG	95	0.0	40.263157	2
TAACGCC	90	0.0	40.0	12
TCTACGG	45	1.9270374E-8	40.0	2
ATAACGC	90	0.0	40.0	11
TAGGGCG	220	0.0	39.886368	5
CACGGGT	85	0.0	39.705883	4