SRR3550237_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550237_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	791848
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1330	0.16796152797001446	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	1103	0.13929441003829018	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	964	0.12174053606247663	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	60	0.0	45.000004	2
GATCGCA	25	3.889703E-5	45.0	35
TTCGTAA	20	7.031956E-4	45.0	34
AATGCGA	20	7.031956E-4	45.0	25
GCGATAT	25	3.889703E-5	45.0	9
TACTACG	25	3.889703E-5	45.0	21
ACGTAGT	20	7.031956E-4	45.0	41
TAGTACG	45	1.9270374E-8	40.0	1
GATTACG	40	3.4564073E-7	39.375	1
TATGGGT	115	0.0	39.130432	4
GTAACGG	70	0.0	38.57143	2
TACGTCA	35	6.2458257E-6	38.57143	43
GCGAAAC	30	1.1396011E-4	37.500004	35
ACTTCGT	30	1.1396011E-4	37.500004	38
GTTAGCG	60	1.546141E-10	37.500004	1
CGACAAT	30	1.1396011E-4	37.500004	20
AAACGTC	30	1.1396011E-4	37.500004	14
TCGTAAG	30	1.1396011E-4	37.500004	1
CAGTACG	30	1.1396011E-4	37.500004	1
ATCGGAA	30	1.1396011E-4	37.500004	28