SRR3550236_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550236_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	912656
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1771	0.1940490173734682	No Hit
GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	1481	0.16227362774144913	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	1126	0.12337616801949476	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC	1084	0.11877421503830579	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC	967	0.10595448887642223	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG	943	0.10332480145859996	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAATA	20	7.0325215E-4	45.000004	22
TATTGCG	40	6.8121153E-9	45.000004	1
CCGTATA	20	7.0325215E-4	45.000004	20
ATATACG	20	7.0325215E-4	45.000004	1
GCGATAT	40	6.8121153E-9	45.000004	9
TGTACGT	20	7.0325215E-4	45.000004	31
CGTCCAT	20	7.0325215E-4	45.000004	19
AATACGG	40	6.8121153E-9	45.000004	2
TAATCGT	20	7.0325215E-4	45.000004	21
ATTACGT	25	3.8901722E-5	45.0	16
ATAGTAG	65	0.0	41.53846	1
GTATACG	55	6.002665E-11	40.909092	1
TATAGCG	90	0.0	40.0	1
CCCGTAA	40	3.4571713E-7	39.375004	33
CCGTAAA	40	3.4571713E-7	39.375004	34
ACAATCG	40	3.4571713E-7	39.375004	13
TTACGTC	40	3.4571713E-7	39.375004	17
CGATATG	40	3.4571713E-7	39.375004	10
CCGTTCG	40	3.4571713E-7	39.375004	13
GCCCGTA	40	3.4571713E-7	39.375004	32