SRR3550232_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550232_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	947215
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	3301	0.3484953257708123	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	2885	0.3045771023474079	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2134	0.2252920403498678	No Hit
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	1958	0.206711253516889	Illumina Single End Adapter 2 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGC	1494	0.15772554277539946	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCG	1381	0.1457958330474074	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTC	1154	0.12183084093896318	No Hit
TCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	1118	0.11803022545039932	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGT	20	7.0326583E-4	45.0	11
TTTCGCG	20	7.0326583E-4	45.0	1
TAGCGTA	20	7.0326583E-4	45.0	1
TAGAACG	50	2.1827873E-11	45.0	1
CACGCTA	25	3.890285E-5	45.0	19
GCACGAA	20	7.0326583E-4	45.0	9
ATTCGGT	20	7.0326583E-4	45.0	39
AAGCGTA	20	7.0326583E-4	45.0	24
TCTAGCG	40	6.8121153E-9	45.0	1
GCGCAAT	20	7.0326583E-4	45.0	19
GCCGATA	20	7.0326583E-4	45.0	9
CTAACGG	40	6.8121153E-9	45.0	2
ATTCACG	25	3.890285E-5	45.0	18
CTAGTCG	20	7.0326583E-4	45.0	23
GTATGCG	25	3.890285E-5	45.0	1
TCGCTAA	25	3.890285E-5	45.0	20
ACTCGGT	25	3.890285E-5	45.0	20
TCGTAAG	45	3.8380676E-10	45.0	1
ACATGCG	40	6.8121153E-9	45.0	1
CATCGTT	25	3.890285E-5	45.0	36