SRR3550230_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550230_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	919201
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	2711	0.2949300533833188	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2498	0.27175775483272974	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1439	0.15654900288402646	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	1169	0.12717566669313896	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1032	0.11227141832961453	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	35	1.2115743E-7	45.000004	1
CCCGTAT	20	7.032547E-4	45.000004	34
GTCGTTA	35	1.2115743E-7	45.000004	15
CGCACCG	20	7.032547E-4	45.000004	14
CGGTATG	20	7.032547E-4	45.000004	24
TCGGTAT	20	7.032547E-4	45.000004	23
AATCGTC	20	7.032547E-4	45.000004	25
TACCGGT	20	7.032547E-4	45.000004	37
CCCGATT	20	7.032547E-4	45.000004	26
ATCTCGC	50	2.1827873E-11	45.0	33
ACACGAT	25	3.890194E-5	45.0	33
TTACGCA	25	3.890194E-5	45.0	28
CGCAATA	50	2.1827873E-11	45.0	37
CGGACGT	25	3.890194E-5	45.0	20
GTCGATC	30	2.1650267E-6	44.999996	12
TATCGTG	30	2.1650267E-6	44.999996	1
GACGGGT	90	0.0	42.5	4
CGCATGG	85	0.0	42.35294	2
ACGTTAG	80	0.0	42.187504	1
TTCATCG	60	3.6379788E-12	41.249996	15