SRR3550228_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550228_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1528011
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	4387	0.28710526298567224	No Hit
CCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	3381	0.2212680406096553	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3275	0.21433091777480656	No Hit
CTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGCT	2926	0.19149076806384246	No Hit
TCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	2055	0.13448856061900077	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	20	7.0340163E-4	45.000004	34
CACGGAT	20	7.0340163E-4	45.000004	10
CGACGAA	20	7.0340163E-4	45.000004	22
ACGTTAG	115	0.0	45.000004	1
ATCACGT	30	2.1659725E-6	45.000004	12
CGGATAG	20	7.0340163E-4	45.000004	12
CATCGAA	35	1.2122837E-7	45.000004	38
ATAACGC	30	2.1659725E-6	45.000004	11
TAAATCG	30	2.1659725E-6	45.000004	25
ATACGGA	20	7.0340163E-4	45.000004	14
TATACGG	115	0.0	45.000004	2
CAATACG	20	7.0340163E-4	45.000004	24
ACGACTA	30	2.1659725E-6	45.000004	12
CCCGCGA	30	2.1659725E-6	45.000004	29
TAATCCG	35	1.2122837E-7	45.000004	1
TCGCAAA	25	3.891412E-5	45.0	15
CGAATCG	25	3.891412E-5	45.0	2
ATACCGG	25	3.891412E-5	45.0	2
GTATACG	75	0.0	42.0	1
TGATTCG	170	0.0	41.02941	15