SRR3550226_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550226_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	797780
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2454	0.30760359998997217	No Hit
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	1950	0.24442828850058915	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	1594	0.19980445736919955	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	1061	0.13299405851237184	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1051	0.13174058010980472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGG	95	0.0	45.000004	2
TCGATCA	30	2.1646629E-6	45.000004	17
CTGCGTA	30	2.1646629E-6	45.000004	1
CGGCTAC	120	0.0	45.000004	25
CTGTCGA	45	3.8380676E-10	45.0	12
CGAACTG	20	7.031989E-4	45.0	27
GCGACGT	20	7.031989E-4	45.0	10
CGTATGG	55	1.8189894E-12	45.0	2
GTCGACT	20	7.031989E-4	45.0	44
GTCGAAA	25	3.8897295E-5	45.0	17
CACGAAT	25	3.8897295E-5	45.0	12
TCGATAG	20	7.031989E-4	45.0	1
CTAACGG	35	1.2113014E-7	45.0	2
TACGACA	20	7.031989E-4	45.0	26
TCGTCGA	20	7.031989E-4	45.0	42
TCCCGTT	20	7.031989E-4	45.0	39
CGTCGAC	20	7.031989E-4	45.0	43
CGAGACA	100	0.0	45.0	22
ATACGAC	20	7.031989E-4	45.0	25
CGGTACA	20	7.031989E-4	45.0	19