SRR3550225_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550225_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1576981
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12519	0.793858645094646	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	9237	0.5857394603993327	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	7117	0.45130537400260373	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	6118	0.3879564814033904	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	5192	0.3292366870621777	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTT	4087	0.2591660901431279	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	3803	0.24115699555035858	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCC	3762	0.23855709104928977	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	3669	0.23265974669320683	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCT	3506	0.22232354099383567	No Hit
ACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	2366	0.15003351340314183	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCT	2238	0.1419167383754148	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTC	1890	0.11984925626878193	No Hit
ACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	1687	0.10697655837324609	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	1595	0.10114262632206729	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGTCG	45	3.8562575E-10	45.000004	1
GACGTCC	20	7.0340873E-4	45.0	42
GAATCGT	25	3.891468E-5	45.0	33
CAACCGT	40	6.8175723E-9	45.0	20
TCGATTG	20	7.0340873E-4	45.0	1
ACGATCT	20	7.0340873E-4	45.0	29
TGCGATA	20	7.0340873E-4	45.0	14
AACCTCG	25	3.891468E-5	45.0	42
CGTCGAG	20	7.0340873E-4	45.0	14
CGCGTCA	25	3.891468E-5	45.0	39
TATCGAC	20	7.0340873E-4	45.0	15
TAGTACG	40	6.8175723E-9	45.0	1
ATTTACG	30	2.166018E-6	44.999996	1
TTATCGC	60	0.0	44.999996	31
TCGCTAT	30	2.166018E-6	44.999996	23
CAATACG	30	2.166018E-6	44.999996	12
GCTACGA	215	0.0	43.953487	10
CGTTTTT	5675	0.0	42.42291	1
CTATGCG	75	0.0	42.000004	1
CTACGAA	225	0.0	42.0	11