SRR3550223_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550223_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	808436
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	4154	0.5138316453003082	No Hit
CCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	2637	0.3261853752183228	No Hit
CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT	1971	0.2438040859140365	No Hit
TCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	1432	0.17713214156717416	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1075	0.13297280180496662	No Hit
ACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	1038	0.12839606351028404	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTC	944	0.11676867432919859	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGC	869	0.10749150211024744	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGT	20	7.0320425E-4	45.000004	36
TCCGTAT	20	7.0320425E-4	45.000004	40
TATAGCG	30	2.1646993E-6	45.000004	1
ATAACGC	30	2.1646993E-6	45.000004	11
CGCACTA	20	7.0320425E-4	45.000004	34
ACGTACG	40	6.8102963E-9	45.000004	1
CGCGTAA	20	7.0320425E-4	45.000004	31
GCGTAAC	20	7.0320425E-4	45.000004	32
GGTCGAA	25	3.889776E-5	45.0	8
CGACGGT	25	3.889776E-5	45.0	28
TAACGAC	35	1.2113378E-7	45.0	19
TAGCCGT	25	3.889776E-5	45.0	44
TTGAGCG	25	3.889776E-5	45.0	1
CGGTCTA	25	3.889776E-5	45.0	31
GCTACGA	95	0.0	45.0	10
CGTTTAT	25	3.889776E-5	45.0	39
AACAGCG	35	1.2113378E-7	45.0	1
AATACGG	25	3.889776E-5	45.0	2
AAATGCG	25	3.889776E-5	45.0	1
CGTTGAT	90	0.0	42.5	25