SRR3550221_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550221_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	487306
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	3164	0.649284022770087	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	3159	0.6482579734294263	No Hit
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	2100	0.4309407230774913	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	1127	0.23127152138492035	No Hit
ACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	889	0.18243157276947136	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	760	0.15595949978042545	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	715	0.1467250557144792	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	715	0.1467250557144792	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	552	0.11327584720894057	No Hit
GCCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	506	0.10383619327486221	No Hit
ACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	496	0.10178409459354082	No Hit
AGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	494	0.10137367485727652	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	25	3.8874874E-5	45.0	15
TATCACG	20	7.0292834E-4	45.0	1
TTAGGAT	25	3.8874874E-5	45.0	32
GTCGCTA	20	7.0292834E-4	45.0	22
AGATCGA	20	7.0292834E-4	45.0	17
CGAACGT	20	7.0292834E-4	45.0	38
GTATTAG	55	1.8189894E-12	45.0	1
AATCACG	20	7.0292834E-4	45.0	2
CAAGTAA	20	7.0292834E-4	45.0	26
CGCATGG	40	6.8012014E-9	45.0	2
TACGGTA	20	7.0292834E-4	45.0	19
TCGATAG	25	3.8874874E-5	45.0	1
CCCGTTA	25	3.8874874E-5	45.0	43
AATGCGA	35	1.21001E-7	45.0	25
CGGATAT	25	3.8874874E-5	45.0	9
TACGACG	35	1.21001E-7	45.0	1
CGCTAAT	20	7.0292834E-4	45.0	29
ACATGCG	25	3.8874874E-5	45.0	1
ACGTCTT	20	7.0292834E-4	45.0	23
ACGTCGC	25	3.8874874E-5	45.0	20