SRR3550220_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550220_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	569536
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	2144	0.37644679177435664	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	1874	0.3290397797505338	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT	1376	0.24160017979548265	No Hit
TCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	800	0.14046522081132712	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	736	0.12922800314642097	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	25	3.8883176E-5	45.000004	1
CGATGCA	25	3.8883176E-5	45.000004	10
ACGAACC	25	3.8883176E-5	45.000004	16
CTTCGAC	20	7.030286E-4	45.0	14
AGTCACG	35	1.2104829E-7	45.0	1
CGCATCG	40	6.8048394E-9	45.0	21
CGACAAT	40	6.8048394E-9	45.0	20
ATCACGG	35	1.2104829E-7	45.0	2
CCGTCGA	20	7.030286E-4	45.0	24
TACGCTT	20	7.030286E-4	45.0	11
GCCGATC	20	7.030286E-4	45.0	9
ATCCCTA	20	7.030286E-4	45.0	41
CGCTAAT	20	7.030286E-4	45.0	19
TCGCTAA	20	7.030286E-4	45.0	18
CGAATAT	40	6.8048394E-9	45.0	14
AACGAAG	40	6.8048394E-9	45.0	1
TACTAGC	20	7.030286E-4	45.0	1
CGGTCTA	35	1.2104829E-7	45.0	31
ACATCCG	20	7.030286E-4	45.0	29
ACGACTC	20	7.030286E-4	45.0	14