SRR3550218_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550218_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	786518
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	2848	0.3621023295080341	No Hit
CCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	2323	0.2953524267721781	No Hit
CTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGCT	1672	0.21258254737971669	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	976	0.12409124775275328	No Hit
TCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	924	0.11747982881510659	No Hit
ACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	818	0.10400270559605757	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGA	25	3.8896782E-5	45.0	17
AACCCGC	20	7.0319267E-4	45.0	21
TTATGCG	25	3.8896782E-5	45.0	1
GAGTACG	25	3.8896782E-5	45.0	1
CACGAGG	25	3.8896782E-5	45.0	2
ATCACGA	20	7.0319267E-4	45.0	21
CACCTCG	25	3.8896782E-5	45.0	18
CTACGCG	20	7.0319267E-4	45.0	1
TACGAAG	55	1.8189894E-12	45.0	1
AATTACG	25	3.8896782E-5	45.0	1
CTCGACC	20	7.0319267E-4	45.0	12
ATAACGC	40	6.8102963E-9	45.0	11
TACGTTG	25	3.8896782E-5	45.0	1
AAATGCG	20	7.0319267E-4	45.0	1
CCGTAAG	30	2.1646247E-6	44.999996	1
ACATACG	205	0.0	43.90244	17
CGTAAGG	80	0.0	42.1875	2
ATACGAA	220	0.0	40.909092	19
AATACGG	55	6.002665E-11	40.909092	2
CGCATGG	100	0.0	40.5	2