SRR3550204_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550204_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1422755
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	68191	4.792884228134851	No Hit
CCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	2984	0.20973393170292848	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	2845	0.19996415405322773	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGCT	1869	0.13136485199489722	Illumina Single End Adapter 2 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1425	0.1001577924519682	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAT	35	1.2121927E-7	45.000004	9
TAGTACG	35	1.2121927E-7	45.000004	1
CATATCG	20	7.0338533E-4	45.0	1
CGCATCG	25	3.8912753E-5	45.0	21
TTATACG	40	6.8175723E-9	45.0	1
CGCGTAG	20	7.0338533E-4	45.0	1
ATACCGG	20	7.0338533E-4	45.0	2
TATCCGA	20	7.0338533E-4	45.0	30
ACGATAG	30	2.1658689E-6	44.999996	1
ATAACGC	30	2.1658689E-6	44.999996	11
CGTTTTT	37035	0.0	44.349937	1
ATAGCGG	105	0.0	40.714283	2
GTTTTTT	40970	0.0	40.342934	2
TTAGCGC	40	3.4589902E-7	39.375	19
ATATGCG	40	3.4589902E-7	39.375	1
TCTAGCG	40	3.4589902E-7	39.375	1
ATATCGG	40	3.4589902E-7	39.375	2
AACGCAC	40	3.4589902E-7	39.375	1
GCAATTG	40	3.4589902E-7	39.375	1
GTACGTG	35	6.2493364E-6	38.57143	1