SRR3550201_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550201_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1360452
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGC	4214	0.30974999485465127	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTC	4152	0.3051926859602544	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG	3568	0.2622657763743227	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	3112	0.22874750450585538	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	2121	0.1559040671776733	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	1774	0.1303978383654844	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGATC	30	2.165796E-6	45.000004	16
ATCGCTA	20	7.0337445E-4	45.0	33
CCCGCGA	25	3.8911854E-5	45.0	28
TATAGCG	70	0.0	41.785713	1
GTATACG	50	1.0822987E-9	40.5	1
TAGCGCG	45	1.9286745E-8	40.0	1
AATTGCG	45	1.9286745E-8	40.0	1
AATAGCG	80	0.0	39.375	1
TACGGCT	440	0.0	38.863632	7
TCGATCA	35	6.2491363E-6	38.571426	17
CCGCTAT	65	9.094947E-12	38.07692	25
CGCTATC	65	9.094947E-12	38.07692	26
ACGGGAC	285	0.0	37.894737	5
GCAACCG	30	1.14003196E-4	37.500004	1
CGTTATA	30	1.14003196E-4	37.500004	23
TCATCGA	30	1.14003196E-4	37.500004	16
CATCGAT	30	1.14003196E-4	37.500004	11
GACCGAT	620	0.0	36.653225	9
ATTGTCG	25	0.0021072445	36.0	1
TCTAGCG	25	0.0021072445	36.0	1