SRR3550200_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550200_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	996686
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	3473	0.3484547791380635	No Hit
CCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	3011	0.30210116325502717	No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT	2602	0.2610651699732915	No Hit
TCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	1292	0.12962959246944375	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1067	0.10705477953939355	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTGTCG	20	7.032836E-4	45.0	1
ATTAACG	25	3.890432E-5	45.0	1
ATTCGGT	20	7.032836E-4	45.0	12
GCCGCAC	25	3.890432E-5	45.0	37
ATCGTAC	20	7.032836E-4	45.0	16
TCAATCG	20	7.032836E-4	45.0	44
TACGCAA	20	7.032836E-4	45.0	13
CTCGGTT	35	1.2117198E-7	45.0	17
GTCACGC	25	3.890432E-5	45.0	11
TTACGAC	25	3.890432E-5	45.0	32
TCGAGAG	35	1.2117198E-7	45.0	1
ATCGGTA	20	7.032836E-4	45.0	38
CGCAATA	35	1.2117198E-7	45.0	23
CGTCAAG	20	7.032836E-4	45.0	20
TCGAAGT	20	7.032836E-4	45.0	35
TGCAACG	35	1.2117198E-7	45.0	1
TTGTGCG	65	0.0	41.53846	1
TTGCTCG	60	3.6379788E-12	41.249996	1
CGACGGT	115	0.0	41.086956	28
CGACTGG	105	0.0	40.714287	2