SRR3550198_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550198_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	282857
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3440	1.2161622303849648	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCC	1309	0.46277801150404624	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	903	0.3192425854760533	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	864	0.3054546997245958	Illumina Single End Adapter 1 (95% over 22bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	625	0.22095970755540784	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGC	520	0.18383847668609932	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	519	0.18348494115401068	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	494	0.17464655285179437	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	487	0.1721718041271738	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG	462	0.16333341582495747	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTC	448	0.15838391837571633	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	379	0.13398996666159932	No Hit
TCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	358	0.12656572048773762	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGT	322	0.11383844133254611	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATGG	40	6.7830115E-9	45.0	2
AGCGTTC	20	7.024261E-4	45.0	7
CCCTCGT	20	7.024261E-4	45.0	14
AGTTTAG	25	3.8833256E-5	45.0	1
ATATGCG	20	7.024261E-4	45.0	1
TAACGGG	40	6.7830115E-9	45.0	3
TAACGCG	20	7.024261E-4	45.0	1
ACGGGTA	35	1.2075907E-7	45.0	5
ACGGGAG	105	0.0	45.0	5
GCACCTC	20	7.024261E-4	45.0	38
ATCGTAA	20	7.024261E-4	45.0	13
CGTTAGG	25	3.8833256E-5	45.0	2
CGGATAG	25	3.8833256E-5	45.0	18
CCATAGG	20	7.024261E-4	45.0	2
TGTTACG	20	7.024261E-4	45.0	1
GACGGGA	50	2.1827873E-11	45.0	4
TCGTAAA	20	7.024261E-4	45.0	14
TTAGTTG	20	7.024261E-4	45.0	1
TATAGAG	20	7.024261E-4	45.0	1
CGATGCG	20	7.024261E-4	45.0	10