SRR3550195_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550195_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	423936
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3059	0.7215711805555556	No Hit
CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGCT	1845	0.4352072010869565	Illumina PCR Primer Index 8 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCC	1743	0.4111469655797101	No Hit
GCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	1258	0.296742904589372	Illumina PCR Primer Index 8 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	1171	0.2762209390096618	Illumina PCR Primer Index 8 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	817	0.19271776871980678	No Hit
TCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	720	0.16983695652173914	Illumina PCR Primer Index 8 (95% over 23bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGC	678	0.15992980072463767	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	586	0.1382284118357488	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTC	561	0.13233129528985507	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCG	559	0.13185952596618358	No Hit
ACTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	522	0.12313179347826088	Illumina PCR Primer Index 8 (95% over 23bp)
TTGTGGGAGCTTGAACTTTTTTTTTAAACCCCTGTTTTACTTTTGAATGAT	493	0.11629113828502415	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	453	0.10685575181159421	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	450	0.10614809782608695	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	25	3.886625E-5	45.000004	2
CGAAAGG	35	1.2095006E-7	45.000004	2
GCCGATA	35	1.2095006E-7	45.000004	9
GCTACGA	35	1.2095006E-7	45.000004	10
CCTATGC	25	3.886625E-5	45.000004	35
TCACGAC	20	7.028243E-4	45.0	25
CGACGGT	20	7.028243E-4	45.0	28
ATTACGG	20	7.028243E-4	45.0	2
CCTAAGC	20	7.028243E-4	45.0	16
GTAGACT	20	7.028243E-4	45.0	16
TCTAAGT	20	7.028243E-4	45.0	12
AGCGCGC	20	7.028243E-4	45.0	20
TCGTCGG	20	7.028243E-4	45.0	1
AACGATC	20	7.028243E-4	45.0	22
CATAATC	20	7.028243E-4	45.0	11
CACGTAG	20	7.028243E-4	45.0	1
GACTAAT	105	0.0	42.857143	9
CGTTTTT	1965	0.0	41.335876	1
TGCACGG	60	3.6379788E-12	41.250004	2
CATGTGC	45	1.9233994E-8	40.0	37