SRR3550191_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550191_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	353884
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2002	0.5657221010274553	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	1377	0.3891105560014016	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC	1002	0.28314362898576934	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	962	0.2718404901041019	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	694	0.19610945959693007	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	627	0.1771767019701371	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	501	0.14157181449288467	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	496	0.14015892213267625	No Hit
TCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	466	0.13168156797142566	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	465	0.131398989499384	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGC	422	0.11924811520159148	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	416	0.11755264436934137	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	378	0.1068146624317573	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCG	355	0.10031535757479852	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	45	3.8380676E-10	45.000004	14
AATAAGG	35	1.2087366E-7	45.000004	2
TCACGAC	20	7.026662E-4	45.0	25
AGGTAAT	25	3.8853148E-5	45.0	6
CCTACCG	20	7.026662E-4	45.0	33
ATTCGCG	20	7.026662E-4	45.0	1
TGCGACG	20	7.026662E-4	45.0	1
TTAACGG	20	7.026662E-4	45.0	2
CGTAAGG	55	1.8189894E-12	45.0	2
TAGATAG	20	7.026662E-4	45.0	1
TTACGCG	20	7.026662E-4	45.0	1
TAGTGTT	20	7.026662E-4	45.0	11
GTGCGCC	20	7.026662E-4	45.0	45
AGTAACG	25	3.8853148E-5	45.0	1
TACAACG	20	7.026662E-4	45.0	1
TACCGGG	25	3.8853148E-5	45.0	3
ATGATCG	30	2.1612286E-6	44.999996	27
CGTGAGT	30	2.1612286E-6	44.999996	32
GCGTACG	30	2.1612286E-6	44.999996	1
TATAGGG	140	0.0	43.39286	3