SRR3550186_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550186_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	130182
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	360	0.2765359266258008	No Hit
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	193	0.14825398288549876	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	177	0.1359634972576854	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	176	0.13519534190594706	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	135	0.10370097248467529	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAAGG	20	7.0102257E-4	45.000004	2
CGGCAAA	20	7.0102257E-4	45.000004	28
TACGGGT	20	7.0102257E-4	45.000004	4
ATACTTC	20	7.0102257E-4	45.000004	42
ATCCCCG	20	7.0102257E-4	45.000004	12
CTTGACT	20	7.0102257E-4	45.000004	16
AGCGATT	20	7.0102257E-4	45.000004	22
CATACTT	20	7.0102257E-4	45.000004	41
ATTGGGC	20	7.0102257E-4	45.000004	4
CGTAAGG	20	7.0102257E-4	45.000004	2
TACTAGG	20	7.0102257E-4	45.000004	2
TCATACT	20	7.0102257E-4	45.000004	40
TCGAGCC	20	7.0102257E-4	45.000004	12
TCCCCGA	20	7.0102257E-4	45.000004	13
GGCGATA	40	6.7357178E-9	45.000004	8
ATACGGG	20	7.0102257E-4	45.000004	3
CGCAAGG	20	7.0102257E-4	45.000004	2
CGCAAAA	20	7.0102257E-4	45.000004	45
CGTCATA	20	7.0102257E-4	45.000004	38
TGCGTTG	20	7.0102257E-4	45.000004	1