##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550186_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 130182 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.3329646187645 33.0 31.0 34.0 31.0 34.0 2 32.45558525756249 34.0 31.0 34.0 31.0 34.0 3 32.42330736968245 34.0 31.0 34.0 31.0 34.0 4 36.002504186446664 37.0 35.0 37.0 35.0 37.0 5 36.065485243735694 37.0 35.0 37.0 35.0 37.0 6 36.11117512405709 37.0 36.0 37.0 35.0 37.0 7 36.14561921002904 37.0 37.0 37.0 35.0 37.0 8 36.1427309459065 37.0 37.0 37.0 35.0 37.0 9 37.927194235762244 39.0 38.0 39.0 35.0 39.0 10 37.64651027023705 39.0 37.0 39.0 35.0 39.0 11 37.534397996650846 39.0 37.0 39.0 35.0 39.0 12 37.212702216896346 39.0 37.0 39.0 35.0 39.0 13 37.02961238880951 39.0 35.0 39.0 33.0 39.0 14 38.19618687683397 40.0 37.0 41.0 33.0 41.0 15 38.39460140418798 40.0 37.0 41.0 34.0 41.0 16 38.45914949839455 40.0 37.0 41.0 35.0 41.0 17 38.44261111367163 40.0 37.0 41.0 35.0 41.0 18 38.41362093069702 40.0 36.0 41.0 35.0 41.0 19 38.306232812524 40.0 36.0 41.0 34.0 41.0 20 38.197861455500764 40.0 36.0 41.0 34.0 41.0 21 38.09038115868553 40.0 35.0 41.0 34.0 41.0 22 38.064801585472644 40.0 35.0 41.0 34.0 41.0 23 38.0562520164078 40.0 35.0 41.0 34.0 41.0 24 37.947089459372265 40.0 35.0 41.0 34.0 41.0 25 37.881711757385816 40.0 35.0 41.0 34.0 41.0 26 37.917692154061235 40.0 35.0 41.0 34.0 41.0 27 37.85093177244166 40.0 35.0 41.0 34.0 41.0 28 37.796830591018725 40.0 35.0 41.0 34.0 41.0 29 37.772964004240215 40.0 35.0 41.0 34.0 41.0 30 37.68878954079673 40.0 35.0 41.0 34.0 41.0 31 37.60174985789126 40.0 35.0 41.0 34.0 41.0 32 37.442664884546254 40.0 35.0 41.0 33.0 41.0 33 37.307461861086786 40.0 35.0 41.0 33.0 41.0 34 37.23425665606612 40.0 35.0 41.0 33.0 41.0 35 37.124733066015274 40.0 35.0 41.0 33.0 41.0 36 37.057819053325346 39.0 35.0 41.0 33.0 41.0 37 36.96802169270713 39.0 35.0 41.0 33.0 41.0 38 36.874614001935754 39.0 35.0 41.0 32.0 41.0 39 36.79277473076155 39.0 35.0 41.0 32.0 41.0 40 36.662172957859 39.0 35.0 41.0 32.0 41.0 41 36.56383370972946 39.0 35.0 41.0 32.0 41.0 42 36.52474228387949 39.0 35.0 41.0 32.0 41.0 43 36.42004270943756 39.0 35.0 41.0 32.0 41.0 44 36.330890599314806 38.0 35.0 41.0 31.0 41.0 45 36.25182436896038 38.0 35.0 41.0 31.0 41.0 46 36.17076093469143 38.0 35.0 41.0 31.0 41.0 47 36.14067228956384 38.0 35.0 41.0 31.0 41.0 48 36.05597548048117 38.0 35.0 41.0 31.0 41.0 49 36.01978768186078 38.0 35.0 40.0 31.0 41.0 50 35.89134442549661 37.0 35.0 40.0 31.0 41.0 51 34.97520394524589 36.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 6.0 10 6.0 11 2.0 12 3.0 13 5.0 14 6.0 15 10.0 16 20.0 17 21.0 18 43.0 19 76.0 20 123.0 21 184.0 22 265.0 23 384.0 24 593.0 25 755.0 26 967.0 27 1147.0 28 1219.0 29 1440.0 30 1560.0 31 1991.0 32 2590.0 33 3712.0 34 9066.0 35 15293.0 36 8170.0 37 12113.0 38 21648.0 39 46701.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.14994392465932 21.869382863990413 26.155689726690323 11.824983484659937 2 31.00044553010401 24.99577514556544 26.68648507474152 17.31729424958904 3 31.024258346007898 24.840607764514296 26.38613633221183 17.74899755726598 4 29.066998509778617 26.681876142631083 25.062604661166677 19.188520686423622 5 24.954294756571567 31.47900631423699 24.5702170807024 18.99648184848904 6 25.43669631746324 36.298412991043314 23.40876618887404 14.85612450261941 7 80.28836551904257 7.784486334516292 7.369682444577591 4.557465701863546 8 82.87781720975251 6.591541073266657 6.582323209045797 3.9483185079350447 9 76.9645573120708 8.393633528444793 8.977431595765928 5.664377563718486 10 47.48121860165 23.844310273309674 14.637200227373985 14.037270897666343 11 38.2940805948595 22.761211227358622 20.999062850470878 17.945645327310995 12 33.239618380421255 22.84954909280853 25.301500975557296 18.609331551212918 13 24.77915533637523 28.536203161727432 27.482294019142433 19.20234748275491 14 20.323086140941143 30.39897988969289 28.79507151526325 20.48286245410272 15 19.842989046104684 24.12238251063895 36.32299396229893 19.71163448095743 16 22.208907529458756 22.795010062835107 33.39401760612066 21.60206480158547 17 23.025456668356608 23.051573950315714 27.503034213639367 26.419935167688312 18 24.878247376749474 25.04186446666974 28.422516169670153 21.657371986910633 19 27.118188382418463 26.940744496166907 25.095635341291423 20.84543178012321 20 28.1429076216374 25.6402574856739 25.421333210428475 20.79550168226022 21 26.42531225515048 26.118818269806887 25.786975157855924 21.66889431718671 22 23.858137069640964 26.087323900385613 26.07656972546128 23.977969304512143 23 23.897312992579618 26.318538661258856 26.613510316326373 23.170638029835153 24 23.942634158332183 24.702339801201393 29.43571307861302 21.919312961853404 25 22.685163847536526 25.800801954187214 27.77649751885821 23.737536679418046 26 21.24256809697193 28.403312285876698 26.330829146886664 24.02329047026471 27 22.301086171667357 28.091441213070933 28.659108018005565 20.94836459725615 28 20.184818177628244 27.771888586747785 29.619302207678484 22.42399102794549 29 22.33642131784732 26.35617827349403 29.467207448034287 21.840192960624357 30 23.545497841483463 27.54605091333671 27.148914596487995 21.75953664869183 31 26.04584351139174 27.92167888033676 23.551643084297368 22.480834523974128 32 27.251847413620933 27.619025671751857 23.90115376933831 21.227973145288903 33 25.78543884715245 27.863299073604647 24.244519211565347 22.10674286767756 34 22.261910248728704 28.900308798451395 26.326220214776235 22.511560738043663 35 23.549338618242153 26.848565853958306 26.843188766496134 22.758906761303404 36 25.205481556590005 28.56462490974175 25.051850486242337 21.178043047425913 37 25.219308352921292 29.252123949547553 26.064279239833464 19.464288457697684 38 23.991027945491698 29.20065754098109 23.427201917315756 23.38111259621146 39 24.697730869090964 27.90708392865373 25.01421087400716 22.380974328248147 40 25.243121168825184 25.93215651933447 24.988093592048056 23.83662871979229 41 20.99368576300871 25.82922370220153 26.152617105283372 27.024473429506386 42 23.474059393771796 26.03816195787436 25.6702155443917 24.817563103962144 43 24.85597087154906 24.18767571553671 27.08515770229371 23.871195710620515 44 22.571476855479254 27.823354995314254 26.197170115684198 23.4079980335223 45 22.408627920910725 28.334946459571984 25.033414757800614 24.223010861716674 46 23.55548386105606 28.252753836935984 25.265397674025596 22.926364627982363 47 22.685932002888265 26.274753806209766 28.112181407567867 22.927132783334102 48 24.160022122874132 23.942634158332183 28.49856354949225 23.39878016930144 49 23.927271051297414 24.159253967522393 28.749750349510684 23.163724631669506 50 21.86093315512129 26.46295186738566 28.538507627782643 23.137607349710407 51 21.65429936550368 26.87237866986219 25.833832634311964 25.639489330322164 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 52.0 1 146.5 2 241.0 3 467.0 4 693.0 5 509.5 6 326.0 7 341.5 8 357.0 9 384.0 10 411.0 11 440.0 12 469.0 13 439.0 14 409.0 15 384.5 16 360.0 17 381.0 18 402.0 19 438.5 20 475.0 21 495.5 22 516.0 23 474.5 24 433.0 25 478.5 26 817.5 27 1111.0 28 1260.5 29 1410.0 30 1642.5 31 1875.0 32 2128.5 33 2382.0 34 2501.5 35 2621.0 36 3161.5 37 3702.0 38 3710.0 39 3718.0 40 4800.0 41 5882.0 42 6956.5 43 8031.0 44 8690.5 45 9350.0 46 9948.5 47 10547.0 48 10583.5 49 10620.0 50 10130.0 51 9640.0 52 9103.0 53 8566.0 54 7680.0 55 6794.0 56 7048.5 57 7303.0 58 6939.5 59 6576.0 60 6335.0 61 6094.0 62 5548.0 63 5002.0 64 4637.0 65 4272.0 66 3570.5 67 2869.0 68 2534.0 69 2199.0 70 1831.5 71 1464.0 72 1231.0 73 998.0 74 852.5 75 511.5 76 316.0 77 303.5 78 291.0 79 177.0 80 63.0 81 55.0 82 47.0 83 51.0 84 55.0 85 30.5 86 6.0 87 3.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 130182.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.618948856216676 #Duplication Level Percentage of deduplicated Percentage of total 1 72.50141296156744 23.649198813968138 2 6.996514694800301 4.56437910002919 3 3.1108703843255463 3.0441996589390237 4 2.0346646571213265 2.654744895607688 5 1.7873963828183872 2.9151495598469834 6 1.3587980406932931 2.659353827718118 7 1.2127920120572722 2.7692000430166996 8 1.1397889977392615 2.9742975219308354 9 0.9466842501883949 2.7791860625892983 >10 8.85926902788244 50.132890875850734 >50 0.03296910324039186 0.8073312746769907 >100 0.018839487565938208 1.0500683658263046 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 360 0.2765359266258008 No Hit GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC 193 0.14825398288549876 Illumina Single End Adapter 2 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 177 0.1359634972576854 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 176 0.13519534190594706 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 135 0.10370097248467529 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06606136024949685 0.0 2 0.0 0.0 0.0 0.40942680247653285 0.0 3 0.0 0.0 0.0 0.5799572905624434 0.0 4 0.0 0.0 0.0 0.7620101089244289 0.0 5 0.0 0.0 0.0 1.3281406031555822 0.0 6 0.0 0.0 0.0 1.7406400270390683 0.0 7 0.0 0.0 0.0 2.161589159791676 0.0 8 0.0 0.0 0.0 2.9950377164277704 0.0 9 0.0 0.0 0.0 3.445176752546435 0.0 10 0.0 0.0 0.0 4.244826473706042 0.0 11 0.0 0.0 0.0 5.0191270682582845 0.0 12 0.0 0.0 0.0 5.717380282988431 0.0 13 0.0 0.0 0.0 5.968567083006867 0.0 14 0.0 0.0 0.0 6.0553686377533 0.0 15 0.0 0.0 0.0 6.204390775990536 0.0 16 0.0 0.0 0.0 6.538538353996712 0.0 17 0.0 0.0 0.0 6.972546127728872 0.0 18 0.0 0.0 0.0 7.5563441950500065 0.0 19 0.0 0.0 0.0 7.820589636047995 0.0 20 0.0 0.0 0.0 8.074849057473383 0.0 21 0.0 0.0 0.0 8.365979935782212 0.0 22 0.0 0.0 0.0 8.675546542532762 0.0 23 0.0 0.0 0.0 8.95822771197247 0.0 24 0.0 0.0 0.0 9.21171897804612 0.0 25 0.0 0.0 0.0 9.422193544422424 0.0 26 0.0 0.0 0.0 9.624218401929607 0.0 27 0.0 0.0 0.0 9.828547725492003 0.0 28 0.0 0.0 0.0 10.045167534682214 0.0 29 0.0 0.0 0.0 10.274077829500238 0.0 30 0.0 0.0 0.0 10.518351231353028 0.0 31 0.0 0.0 0.0 10.720376088860212 0.0 32 0.0 0.0 0.0 10.952359005085189 0.0 33 0.0 0.0 0.0 11.197400562289717 0.0 34 0.0 0.0 0.0 11.430151633866434 0.0 35 0.0 0.0 0.0 11.65752561798098 0.0 36 0.0 0.0 0.0 11.871840961115977 0.0 37 0.0 0.0 0.0 12.108432809451383 0.0 38 0.0 0.0 0.0 12.355778832711128 0.0 39 0.0 0.0 0.0 12.634619225392143 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAAAGG 20 7.0102257E-4 45.000004 2 CGGCAAA 20 7.0102257E-4 45.000004 28 TACGGGT 20 7.0102257E-4 45.000004 4 ATACTTC 20 7.0102257E-4 45.000004 42 ATCCCCG 20 7.0102257E-4 45.000004 12 CTTGACT 20 7.0102257E-4 45.000004 16 AGCGATT 20 7.0102257E-4 45.000004 22 CATACTT 20 7.0102257E-4 45.000004 41 ATTGGGC 20 7.0102257E-4 45.000004 4 CGTAAGG 20 7.0102257E-4 45.000004 2 TACTAGG 20 7.0102257E-4 45.000004 2 TCATACT 20 7.0102257E-4 45.000004 40 TCGAGCC 20 7.0102257E-4 45.000004 12 TCCCCGA 20 7.0102257E-4 45.000004 13 GGCGATA 40 6.7357178E-9 45.000004 8 ATACGGG 20 7.0102257E-4 45.000004 3 CGCAAGG 20 7.0102257E-4 45.000004 2 CGCAAAA 20 7.0102257E-4 45.000004 45 CGTCATA 20 7.0102257E-4 45.000004 38 TGCGTTG 20 7.0102257E-4 45.000004 1 >>END_MODULE