SRR3550183_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550183_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	238698
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	620	0.2597424360488986	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	496	0.2077939488391189	No Hit
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	439	0.1839144022991395	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	352	0.14746667336969727	Illumina Single End Adapter 1 (95% over 21bp)
GCTCTTGGGCTGTCTCTTATACACATCTGACGCCGGTTTGTCTCGTATGCC	333	0.13950682452303748	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	328	0.137412127458127	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	280	0.11730303563498645	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	272	0.11395152033112971	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	269	0.11269470209218342	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	243	0.10180227735464896	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	20	7.0220424E-4	45.000004	1
AACCCCG	20	7.0220424E-4	45.000004	11
TAGAATA	20	7.0220424E-4	45.000004	11
ACGGGTC	20	7.0220424E-4	45.000004	5
GTATGCG	20	7.0220424E-4	45.000004	1
AGCGCAA	20	7.0220424E-4	45.000004	26
GCGATTA	30	2.158251E-6	45.000004	23
ACATCGG	20	7.0220424E-4	45.000004	2
GGCGATA	60	0.0	45.000004	8
AGGGCGC	30	2.158251E-6	45.000004	6
GCGTAAG	20	7.0220424E-4	45.000004	1
CTCGTAT	50	2.1827873E-11	45.0	42
ATAGGGT	35	1.2065175E-7	45.0	4
TCGTGTA	25	3.88149E-5	45.0	17
ATTCAAT	25	3.88149E-5	45.0	14
CAGATGA	25	3.88149E-5	45.0	34
TGATTGG	25	3.88149E-5	45.0	2
GTATACG	25	3.88149E-5	45.0	1
TAGGGAC	160	0.0	43.593754	5
TAGATGG	55	6.002665E-11	40.909092	2