SRR3550175_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550175_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1260962
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	7923	0.6283297989947357	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	7279	0.5772576810403486	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	5639	0.4471982502248283	No Hit
TCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	2510	0.19905437277253402	No Hit
ACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	2254	0.17875241284035523	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1880	0.1490925182519378	No Hit
CGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTG	1579	0.12522185442543074	No Hit
GCCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTG	1538	0.12197036865504274	No Hit
ACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTG	1526	0.12101871428322186	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCC	1473	0.11681557414101296	No Hit
AGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTG	1423	0.1128503475917593	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACG	40	6.8157533E-9	45.0	1
ACACGAA	25	3.8910224E-5	45.0	6
CGAAACG	20	7.0335483E-4	45.0	32
TAAGTCG	35	1.2120472E-7	45.0	1
CGACAAT	25	3.8910224E-5	45.0	20
AATGCGA	25	3.8910224E-5	45.0	25
AGACGCA	25	3.8910224E-5	45.0	44
CGCTATA	20	7.0335483E-4	45.0	29
CTACGAT	25	3.8910224E-5	45.0	20
TATTACG	25	3.8910224E-5	45.0	1
TTACGCG	20	7.0335483E-4	45.0	1
CCACGCG	20	7.0335483E-4	45.0	15
ATAGCCG	30	2.1656706E-6	44.999996	1
CCCCGCA	30	2.1656706E-6	44.999996	5
TAGTGCG	30	2.1656706E-6	44.999996	1
ATGATCG	85	0.0	42.35294	27
CGTGAGT	85	0.0	42.35294	32
TGATTCG	80	0.0	42.1875	15
TGTCGCA	80	0.0	42.1875	39
TTTAGCG	65	0.0	41.538464	1